Metam
ORF

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Transcript

ID CARD

MetamORF ID

2203

ID

ENST00000468153

Name

CD81-204

Strand

+

Biotype

retained_intron

Start-end positions

2394850-2397252

CDS Start-stop positions

-

CDS Relative positions

-

Sequences

Transcript sequence

TCG ...

Gene

ID

HGNC:1701

Aliases

CD81,
ENSG00000110651, HGNC:1701, NCBI:975,
OFF:CD81, TAPA-1, TAPA1,
TSPAN28


Chr 11

ORFs

21 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

2217 126

CTG ...

LLW ...

Ribo-seq
CTG 26 sORFs_org_Human
    Intronic
    sORF
BJ, Blood, Brain,
guo_2014, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, MDA-MB-231, RPE-1,
THP-1, U2OS
2202 93

CTG ...

LPG ...

Ribo-seq
CTG 29 sORFs_org_Human
    Intronic
    sORF
BJ, Blood, Brain,
guo_2014, HAP1, HEK293,
HEK293T, HeLa, hES,
HFF, LCL, loayza_puch_2016,
MDA-MB-231, RPE-1, THP-1,
U2OS
100789 126

GTG ...

VDD ...

Ribo-seq
GTG 9 sORFs_org_Human
    Intronic
    sORF
BJ, guo_2014, HEK293,
HEK293T, HeLa, loayza_puch_2016
2215 30

ATG ...

MTP ...

Ribo-seq
ATG moderate 27 sORFs_org_Human
    Intronic
    sORF
BJ, Blood, Brain,
guo_2014, HAP1, HEK293,
HEK293T, HeLa, hES,
HFF, LCL, loayza_puch_2016,
MDA-MB-231, RPE-1, THP-1,
U2OS
903399 57

AGG ...

RPY ...

Ribo-seq
AGG moderate 3 sORFs_org_Human
    Intronic
    sORF
HeLa, Jurkat, THP-1
282287 150

CTG ...

LGV ...

Ribo-seq
CTG 4 sORFs_org_Human
    Intronic
    sORF
HEK293, HEK293T, HFF,
LCL
2209 165

GTG ...

VKQ ...

Ribo-seq
GTG 23 sORFs_org_Human
    Intronic
    sORF
BJ, Brain, Flp-In_T-REx-293,
guo_2014, HEK293, HEK293T,
HeLa, hES, HFF,
loayza_puch_2016, THP-1
100781 144

CTG ...

LVI ...

Ribo-seq
CTG 9 sORFs_org_Human
    Intronic
    sORF
BJ, Brain, guo_2014,
HEK293, HeLa
2219 123

CTG ...

LWL ...

Ribo-seq
CTG 24 sORFs_org_Human
    Intronic
    sORF
BJ, Blood, Brain,
guo_2014, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, RPE-1, THP-1,
U2OS
282289 144

GTG ...

VCP ...

Ribo-seq
GTG 4 sORFs_org_Human
    Intronic
    sORF
HEK293, HEK293T, HFF,
LCL
903395 78

GGT ...

GGR ...

Ribo-seq
GGT 1 sORFs_org_Human
    Intronic
    sORF
Jurkat
903397 69

AGT ...

SSM ...

Ribo-seq
AGT moderate 4 sORFs_org_Human
    Intronic
    sORF
HEK293, HeLa, Jurkat,
THP-1
2205 54

TTG ...

LPV ...

Ribo-seq
TTG 32 sORFs_org_Human
    Intronic
    sORF
BJ, Blood, Brain,
Flp-In_T-REx-293, guo_2014, HAP1,
HEK293, HEK293T, HeLa,
hES, HFF, LCL,
loayza_puch_2016, MDA-MB-231, Monocyte,
RPE-1, THP-1, U2OS
3199907 87

AGT ...

SAQ ...

Ribo-seq
AGT 1 sORFs_org_Human
    Intronic
    sORF
HEK293
1007374 135

CTG ...

LFA ...

Ribo-seq
CTG 3 sORFs_org_Human
    Intronic
    sORF
guo_2014, HEK293
100796 69

GTG ...

VSL ...

Ribo-seq
GTG 10 sORFs_org_Human
    Intronic
    sORF
Brain, guo_2014, HEK293,
hES, HFF, Monocyte,
THP-1, U2OS
2207 48

GTG ...

VRW ...

Ribo-seq
GTG 34 sORFs_org_Human
    Intronic
    sORF
BJ, Blood, Brain,
Flp-In_T-REx-293, guo_2014, HAP1,
HCT116, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, loayza_puch_2016, MDA-MB-231,
Monocyte, RPE-1, THP-1,
U2OS
2213 33

ATG ...

MMT ...

Ribo-seq
ATG weak 28 sORFs_org_Human
    Intronic
    sORF
BJ, Blood, Brain,
guo_2014, HAP1, HEK293,
HEK293T, HeLa, hES,
HFF, LCL, loayza_puch_2016,
MDA-MB-231, RPE-1, THP-1,
U2OS
100787 129

GTG ...

VVD ...

Ribo-seq
GTG 12 sORFs_org_Human
    Intronic
    sORF
BJ, Brain, guo_2014,
HEK293, HEK293T, HeLa,
loayza_puch_2016
2211 63

ATG ...

MTR ...

Ribo-seq
ATG weak 29 sORFs_org_Human
    Intronic
    sORF
BJ, Blood, Brain,
Flp-In_T-REx-293, guo_2014, HAP1,
HEK293, HEK293T, HeLa,
hES, HFF, LCL,
loayza_puch_2016, MDA-MB-231, RPE-1,
THP-1, U2OS
2903548 63

CTG ...

LGL ...

Ribo-seq
CTG 1 sORFs_org_Human
    Intronic
    sORF
HeLa

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

B_cell

BJ

Blood

Brain

Brain_tumor

Breast

Flp-In_T-REx-293

guo_2014

HAP1

HCT116

HEK293

HEK293T

HeLa

hES

HFF

Jurkat

LCL

loayza_puch_2016

MDA-MB-231

MM1S

Monocyte

NCCIT

RPE-1

Skeletal_muscle

THP-1

U2OS