Transcript 203 | MetamORF

Transcript

ID CARD

MetamORF ID

203

ENST00000471297

Name

SMNDC1-204

Strand

Biotype

processed_transcript

Start-end positions

110297570-110304938

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTC ...

Genome browsers

UCSC

Gene

HGNC:16900

Aliases

ENSG00000119953,
HGNC:16900, NCBI:10285, OFF:SMNDC1,
SMNDC1, SMNR, SPF30,
TDRD16C

Chr 10

ORFs

11 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1134436	39	CTG ...	LST ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	HEK293
1438455	168	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	HeLa
212	120	CTG ...	LST ...	Ribo-seq	CTG		28	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
631654	57	ATG ...	MKK ...	Ribo-seq	ATG	weak	10	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, HEK293, HeLa, MDA-MB-231, RPE-1, THP-1
195	72	TTG ...	LNL ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	Jurkat
1438457	174	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	HeLa
480858	48	ATG ...	MAP ...	Ribo-seq	ATG	strong	11	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, HEK293, HEK293T, HeLa, MDA-MB-231, RPE-1, THP-1
898911	153	GAG ...	EIE ...	Ribo-seq	GAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
480856	39	CTG ...	LQS ...	Ribo-seq	CTG	weak	10	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, HEK293, HEK293T, HeLa, MDA-MB-231, THP-1
202	39	ATG ...	MES ...	Ribo-seq	ATG	moderate	10	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, U2OS
1313896	183	GTG ...	VIF ...	Ribo-seq	GTG		2	sORFs_org_Human	ncRNA sORF	HEK293, HeLa

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