Metam
ORF

Logo

Transcript

Transcript

ID CARD

MetamORF ID

2

ID

ENST00000405356

Name

NOLC1-202

Strand

+

Biotype

protein_coding

Start-end positions

102152176-102163871

CDS Start-stop positions

102152411-102162269

CDS Relative positions

-

Sequences

Transcript sequence

GCG ...

Gene

ID

HGNC:15608

Aliases

ENSG00000166197,
HGNC:15608, KIAA0035, NCBI:9221,
NOLC1, NOPP130, NOPP140,
OFF:NOLC1, P130


Chr 10

ORFs

100 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

3199542 87

ACT ...

TPV ...

Ribo-seq
ACT moderate 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HEK293
898451 30

AGC ...

SYH ...

Ribo-seq
AGC moderate 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
44 117

CTG ...

LRA ...

Ribo-seq
CTG moderate 19 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HEK293T, HeLa,
hES, LCL, MDA-MB-231,
MM1S, RPE-1, THP-1
898483 39

ATT ...

IHE ...

Ribo-seq
ATT 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
20 99

CTG ...

LTA ...

Ribo-seq
CTG moderate 16 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, Flp-In_T-REx-293, HAP1,
HEK293, HEK293T, HeLa,
hES, LCL, MDA-MB-231,
RPE-1, THP-1
16 162

CTG ...

LLP ...

Ribo-seq
CTG 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
HEK293
900394 42

AGT ...

SFQ ...

Ribo-seq
AGT 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
405137 51

AGC ...

SRM ...

Ribo-seq
AGC moderate 2 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HCT116, Jurkat
686 246

CTG ...

LYL ...

Ribo-seq
CTG 25 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, LCL,
MDA-MB-231, MM1S, RPE-1,
THP-1, U2OS
46 93

CTG ...

LMT ...

Ribo-seq
CTG weak 18 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HeLa, hES,
LCL, MDA-MB-231, RPE-1,
THP-1
54 39

CTG ...

LPR ...

Ribo-seq
CTG moderate 16 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HEK293,
HEK293T, HeLa, hES,
HFF, MDA-MB-231, RPE-1,
THP-1
898445 102

CCA ...

PRQ ...

Ribo-seq
CCA moderate 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
32 144

CTG ...

LPK ...

Ribo-seq
CTG weak 19 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HeLa, hES,
LCL, MDA-MB-231, MM1S,
RPE-1, THP-1
277800 30

CTG ...

LQL ...

Ribo-seq
CTG moderate 11 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HEK293, HeLa,
hES, LCL, MDA-MB-231,
RPE-1
58 30

TTG ...

LRT ...

Ribo-seq
TTG 20 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, LCL,
MDA-MB-231, RPE-1, THP-1,
U2OS
277767 81

CTG ...

LED ...

Ribo-seq
CTG moderate 17 sORFs_org_Human
    Alternative
    Overlapping
    sORF
    Upstream
Blood, Flp-In_T-REx-293, HAP1,
HEK293, HEK293T, HeLa,
LCL, MDA-MB-231, MM1S,
RPE-1, THP-1
524735 45

TTG ...

LTA ...

Ribo-seq
TTG moderate 2 sORFs_org_Human
    Alternative
    Downstream
    Overlapping
    sORF
RPE-1, U2OS
688 240

CTG ...

LPS ...

Ribo-seq
CTG 25 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, LCL,
MDA-MB-231, MM1S, RPE-1,
THP-1, U2OS
4 174

CTG ...

LPS ...

Ribo-seq
CTG 9 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HEK293, HEK293T, HeLa,
hES, LCL
702 156

ATG ...

MMR ...

Ribo-seq
ATG 26 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, LCL,
MDA-MB-231, MM1S, RPE-1,
THP-1, U2OS
898472 51

AGG ...

RAL ...

Ribo-seq
AGG strong 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
710 72

TTG ...

LRT ...

Ribo-seq
TTG 16 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HEK293T, HeLa,
hES, LCL, MDA-MB-231,
MM1S, RPE-1, THP-1
898435 69

TCG ...

SAS ...

Ribo-seq
TCG 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
898463 234

AGG ...

RLT ...

Ribo-seq
AGG moderate 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
3199545 141

TCA ...

SPK ...

Ribo-seq
TCA moderate 1 sORFs_org_Human
    Alternative
    Downstream
    Overlapping
    sORF
HEK293
277790 60

CTG ...

LVP ...

Ribo-seq
CTG moderate 14 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, Flp-In_T-REx-293, HAP1,
HEK293, HEK293T, HeLa,
hES, LCL, MDA-MB-231,
RPE-1, THP-1
48 90

ATG ...

MTP ...

Ribo-seq
ATG weak 18 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HeLa, hES,
LCL, MDA-MB-231, RPE-1,
THP-1
277778 57

GTG ...

VMT ...

Ribo-seq
GTG moderate 16 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HEK293,
HEK293T, HeLa, hES,
LCL, MDA-MB-231, RPE-1,
U2OS
898431 102

AAC ...

NGS ...

Ribo-seq
AAC strong 1 sORFs_org_Human
    Alternative
    Overlapping
    sORF
    Upstream
Jurkat
898470 66

AGA ...

RSS ...

Ribo-seq
AGA moderate 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
698 162

ATG ...

MMM ...

Ribo-seq
ATG 25 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, LCL,
MDA-MB-231, MM1S, RPE-1,
THP-1, U2OS
279426 165

TTG ...

LPG ...

Ribo-seq
TTG 19 sORFs_org_Human
    Alternative
    Overlapping
    sORF
    Upstream
Blood, Flp-In_T-REx-293, HAP1,
HEK293, HEK293T, HeLa,
hES, LCL, MDA-MB-231,
MM1S, RPE-1, THP-1
98426 33

GTG ...

VTR ...

Ribo-seq
GTG weak 8 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HEK293, HeLa,
hES, MDA-MB-231, RPE-1
277788 81

ATG ...

MKL ...

Ribo-seq
ATG moderate 15 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, Flp-In_T-REx-293, HAP1,
HEK293, HEK293T, HeLa,
hES, LCL, MDA-MB-231,
RPE-1, THP-1
18 36

CTG ...

LKK ...

Ribo-seq
CTG moderate 15 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HEK293,
HeLa, hES, LCL,
MDA-MB-231, RPE-1, THP-1
8 57

CTG ...

LIL ...

Ribo-seq
CTG moderate 27 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, LCL,
loayza_puch_2016, MDA-MB-231, RPE-1,
THP-1, U2OS
14 105

ATG ...

MVK ...

Ribo-seq
ATG moderate 19 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HEK293T, HeLa,
hES, LCL, MDA-MB-231,
MM1S, RPE-1, U2OS
277810 63

ATG ...

MEK ...

Ribo-seq
ATG strong 8 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, HEK293, LCL,
MDA-MB-231, RPE-1, U2OS
277780 54

ATG ...

MTQ ...

Ribo-seq
ATG moderate 15 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HEK293, HEK293T,
HeLa, hES, LCL,
MDA-MB-231, RPE-1, U2OS
60 117

ATG ...

MRK ...

Ribo-seq
ATG moderate 8 sORFs_org_Human
    Alternative
    Downstream
    Overlapping
    sORF
HEK293, HeLa, hES,
LCL, RPE-1
706 129

CTG ...

LSR ...

Ribo-seq
CTG 23 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, LCL,
MDA-MB-231, RPE-1, THP-1
481066 279

CTG ...

LIL ...

Ribo-seq
CTG 2 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HEK293, HEK293T
40 159

GTG ...

VQP ...

Ribo-seq
GTG moderate 19 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HEK293T, HeLa,
hES, LCL, MDA-MB-231,
MM1S, RPE-1, THP-1
898457 78

GTC ...

VTC ...

Ribo-seq
GTC weak 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
694 177

GTG ...

VKS ...

Ribo-seq
GTG 27 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, LCL,
MDA-MB-231, MM1S, RPE-1,
THP-1, U2OS
898449 51

GGC ...

GQG ...

Ribo-seq
GGC weak 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
898459 69

AGT ...

SEA ...

Ribo-seq
AGT moderate 2 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HEK293, Jurkat
898467 48

AGG ...

RCS ...

Ribo-seq
AGG moderate 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
12 33

ATG ...

MSH ...

Ribo-seq
ATG moderate 19 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HEK293,
HeLa, hES, LCL,
MDA-MB-231, RPE-1, U2OS
277808 72

CTG ...

LPR ...

Ribo-seq
CTG weak 6 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, HEK293, LCL,
RPE-1
277786 84

ATG ...

MMK ...

Ribo-seq
ATG moderate 15 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, Flp-In_T-REx-293, HAP1,
HEK293, HEK293T, HeLa,
hES, LCL, MDA-MB-231,
RPE-1, THP-1
631504 39

CTG ...

LYL ...

Ribo-seq
CTG moderate 13 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HEK293, HeLa, MDA-MB-231,
MM1S, RPE-1, THP-1
277816 42

GTG ...

VQP ...

Ribo-seq
GTG moderate 6 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, HEK293, HeLa,
hES, LCL
708 90

TTG ...

LRW ...

Ribo-seq
TTG 18 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HEK293T, HeLa,
hES, LCL, MDA-MB-231,
MM1S, RPE-1, THP-1
898465 114

AGC ...

SRL ...

Ribo-seq
AGC weak 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
696 165

GTG ...

VMM ...

Ribo-seq
GTG 25 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, LCL,
MDA-MB-231, MM1S, RPE-1,
THP-1, U2OS
22 90

CTG ...

LRM ...

Ribo-seq
CTG moderate 16 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, Flp-In_T-REx-293, HAP1,
HEK293, HEK293T, HeLa,
hES, LCL, MDA-MB-231,
RPE-1, THP-1
34 120

CTG ...

LPS ...

Ribo-seq
CTG weak 20 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HEK293T, HeLa,
hES, LCL, MDA-MB-231,
MM1S, RPE-1, THP-1
898474 45

CTC ...

LQD ...

Ribo-seq
CTC moderate 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
277765 135

TTG ...

LPG ...

Ribo-seq
TTG 22 sORFs_org_Human
    Alternative
    Overlapping
    sORF
    Upstream
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, LCL,
loayza_puch_2016, MDA-MB-231, MM1S,
RPE-1, THP-1
898481 69

GAA ...

EGS ...

Ribo-seq
GAA 2 sORFs_org_Human
    InCDS
    Overlapping
    sORF
HEK293, Jurkat
684 60

CTG ...

LAQ ...

Ribo-seq
CTG 28 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Brain,
Flp-In_T-REx-293, guo_2014, HAP1,
HEK293, HEK293T, HeLa,
hES, LCL, MDA-MB-231,
MM1S, RPE-1, THP-1,
U2OS
98424 48

GTG ...

VRI ...

Ribo-seq
GTG moderate 13 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, HEK293,
HeLa, hES, LCL,
MDA-MB-231, MM1S, RPE-1
56 48

TTG ...

LRW ...

Ribo-seq
TTG 24 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, LCL,
loayza_puch_2016, MDA-MB-231, MM1S,
RPE-1, THP-1, U2OS
900380 99

TCG ...

SAS ...

Ribo-seq
TCG 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
704 153

ATG ...

MRR ...

Ribo-seq
ATG 26 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, LCL,
MDA-MB-231, MM1S, RPE-1,
THP-1, U2OS
898476 33

AAG ...

KPP ...

Ribo-seq
AAG weak 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
50 81

GTG ...

VRK ...

Ribo-seq
GTG weak 19 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HeLa, hES,
Jurkat, LCL, MDA-MB-231,
RPE-1, THP-1, U2OS
28 216

GTG ...

VRK ...

Ribo-seq
GTG weak 17 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HAP1, HEK293,
HeLa, hES, LCL,
MDA-MB-231, MM1S, RPE-1,
THP-1
898443 54

CAA ...

QAS ...

Ribo-seq
CAA moderate 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
692 207

CTG ...

LQP ...

Ribo-seq
CTG 24 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, LCL,
MDA-MB-231, MM1S, RPE-1,
THP-1, U2OS
38 60

GTG ...

VRR ...

Ribo-seq
GTG moderate 15 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HeLa, hES,
LCL, MDA-MB-231, RPE-1
898461 51

CCC ...

PQA ...

Ribo-seq
CCC moderate 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
24 45

CTG ...

LQP ...

Ribo-seq
CTG weak 16 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HEK293,
HeLa, hES, LCL,
loayza_puch_2016, MDA-MB-231, RPE-1,
THP-1, U2OS
277812 42

GTG ...

VRR ...

Ribo-seq
GTG moderate 10 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, HEK293, hES,
LCL, MDA-MB-231, RPE-1,
U2OS
898447 39

AAA ...

KEP ...

Ribo-seq
AAA optimal 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
900390 138

AGA ...

RNS ...

Ribo-seq
AGA 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
42 135

CTG ...

LQR ...

Ribo-seq
CTG weak 20 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, LCL,
MDA-MB-231, MM1S, RPE-1,
THP-1
405761 54

GGC ...

GGS ...

Ribo-seq
GGC 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HCT116
36 81

CTG ...

LIQ ...

Ribo-seq
CTG moderate 16 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HeLa, hES,
LCL, MDA-MB-231, RPE-1
10 51

CTG ...

LTQ ...

Ribo-seq
CTG moderate 26 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, LCL,
loayza_puch_2016, MDA-MB-231, RPE-1,
U2OS
898437 51

GTC ...

VCQ ...

Ribo-seq
GTC weak 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
690 216

CTG ...

LGR ...

Ribo-seq
CTG 24 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, LCL,
MDA-MB-231, MM1S, RPE-1,
THP-1, U2OS
898455 54

CCA ...

PPR ...

Ribo-seq
CCA moderate 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
405763 45

GGT ...

GSF ...

Ribo-seq
GGT 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HCT116
898453 42

ATT ...

IPP ...

Ribo-seq
ATT moderate 2 sORFs_org_Human
    InCDS
    Overlapping
    sORF
HEK293, Jurkat
1 180

CTG ...

LYL ...

Ribo-seq
CTG 10 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HEK293, HEK293T, HeLa,
hES, LCL
898439 33

GCG ...

AKV ...

Ribo-seq
GCG moderate 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
30 195

GTG ...

VRR ...

Ribo-seq
GTG weak 18 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HAP1, HEK293,
HeLa, hES, LCL,
MDA-MB-231, MM1S, RPE-1,
THP-1
1129169 150

CTG ...

LGR ...

Ribo-seq
CTG 4 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HEK293, HeLa
480801 69

CTG ...

LSR ...

Ribo-seq
CTG weak 3 sORFs_org_Human
    Alternative
    Downstream
    Overlapping
    sORF
HEK293, HEK293T, hES
3199697 111

GAA ...

EGS ...

Ribo-seq
GAA 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
HEK293
277771 141

CTG ...

LQP ...

Ribo-seq
CTG 3 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HEK293, LCL
98441 60

CTG ...

LGR ...

Ribo-seq
CTG strong 11 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HEK293, HeLa,
hES, LCL, MDA-MB-231,
MM1S, RPE-1, THP-1
6 63

CTG ...

LIL ...

Ribo-seq
CTG moderate 27 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, LCL,
loayza_puch_2016, MDA-MB-231, RPE-1,
THP-1, U2OS
1817130 36

CTG ...

LTV ...

Ribo-seq
CTG moderate 1 sORFs_org_Human
    Alternative
    Downstream
    sORF
HeLa
52 45

ATG ...

MRL ...

Ribo-seq
ATG moderate 16 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HEK293,
HEK293T, HeLa, hES,
HFF, MDA-MB-231, RPE-1,
THP-1
700 159

ATG ...

MMM ...

Ribo-seq
ATG 26 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, LCL,
MDA-MB-231, MM1S, RPE-1,
THP-1, U2OS
898433 63

CGG ...

RHS ...

Ribo-seq
CGG weak 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
26 231

CTG ...

LTA ...

Ribo-seq
CTG moderate 18 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HeLa, hES,
LCL, MDA-MB-231, MM1S,
RPE-1

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

B_cell

BJ

Blood

Brain

Brain_tumor

Breast

Flp-In_T-REx-293

guo_2014

HAP1

HCT116

HEK293

HEK293T

HeLa

hES

HFF

Jurkat

LCL

loayza_puch_2016

MDA-MB-231

MM1S

Monocyte

NCCIT

RPE-1

Skeletal_muscle

THP-1

U2OS