Transcript 1999 | MetamORF

Transcript

ID CARD

MetamORF ID

1999

ENST00000525722

Name

RPLP2-203

Strand

Biotype

retained_intron

Start-end positions

811372-812875

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TGC ...

Genome browsers

UCSC

Gene

HGNC:10377

Aliases

D11S2243E,
ENSG00000177600, HGNC:10377, LP2,
MGC71408, NCBI:6181, OFF:RPLP2,
P2, RPLP2, RPP2

Chr 11

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
2012	84	ATG ...	MRR ...	Ribo-seq	ATG	moderate	33	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
2001	30	TTG ...	LKT ...	Ribo-seq	TTG		35	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
2014	66	CTG ...	LKS ...	Ribo-seq	CTG	moderate	29	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
1439165	177	TTG ...	LLQ ...	Ribo-seq	TTG		1	sORFs_org_Human	Intronic sORF	HeLa
1094036	252	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	HEK293
1094030	276	CTG ...	LLP ...	Ribo-seq	CTG		2	sORFs_org_Human	Intronic sORF	HEK293, HEK293T
1998	42	ATG ...	MEK ...	Ribo-seq	ATG		34	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
2010	144	CTG ...	LAL ...	Ribo-seq	CTG		18	sORFs_org_Human	Intronic sORF	BJ, Flp-In_T-REx-293, guo_2014, HEK293, HEK293T, HeLa, HFF, LCL, loayza_puch_2016, MM1S
2016	54	ATG ...	MMT ...	Ribo-seq	ATG	weak	15	sORFs_org_Human	Intronic sORF	Brain, HEK293, HEK293T, HeLa, hES, HFF, LCL, RPE-1, THP-1, U2OS
1094038	249	CTG ...	LLV ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	HEK293
1094042	174	CTG ...	LQW ...	Ribo-seq	CTG		5	sORFs_org_Human	Intronic sORF	HEK293, HeLa
1094034	261	CTG ...	LQP ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	HEK293
1439163	180	GTG ...	VLL ...	Ribo-seq	GTG		1	sORFs_org_Human	Intronic sORF	HeLa
1094032	273	CTG ...	LPQ ...	Ribo-seq	CTG		2	sORFs_org_Human	Intronic sORF	HEK293, HEK293T
282153	51	ATG ...	MTW ...	Ribo-seq	ATG	moderate	10	sORFs_org_Human	Intronic sORF	HEK293, HEK293T, HeLa, HFF, LCL, RPE-1, THP-1, U2OS
1094040	246	CTG ...	LVL ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	HEK293

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