Transcript 1982 | MetamORF

Transcript

ID CARD

MetamORF ID

1982

ENST00000528602

Name

GATD1-209

Strand

Biotype

retained_intron

Start-end positions

773330-777484

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAC ...

Genome browsers

UCSC

Gene

HGNC:26616

Aliases

ENSG00000177225,
FLJ34283, GATD1, HGNC:26616,
NCBI:347862, OFF:GATD1, PDDC1

Chr 11

ORFs

15 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1981	63	CTG ...	LAS ...	Ribo-seq	CTG	strong	9	sORFs_org_Human	Intronic sORF	Brain, HEK293, hES, MDA-MB-231, RPE-1, U2OS
1722413	72	CTG ...	LSW ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	Intronic sORF	Blood, HEK293, MDA-MB-231
1315757	156	GTG ...	VDV ...	Ribo-seq	GTG		2	sORFs_org_Human	Intronic sORF	HEK293, hES
1984	72	CTG ...	LTD ...	Ribo-seq	CTG	moderate	11	sORFs_org_Human	Intronic sORF	Brain, HEK293, HeLa, hES, MDA-MB-231, RPE-1, U2OS
526477	45	CTG ...	LAR ...	Ribo-seq	CTG	moderate	8	sORFs_org_Human	Intronic sORF	HEK293, HeLa, hES, MDA-MB-231, RPE-1, U2OS
1296741	66	CTG ...	LGA ...	Ribo-seq	CTG		4	sORFs_org_Human	Intronic sORF	Blood, HEK293, HEK293T, MDA-MB-231
406547	75	GCC ...	ALT ...	Ribo-seq	GCC	moderate	1	sORFs_org_Human	Intronic sORF	HCT116
526473	33	CTG ...	LQH ...	Ribo-seq	CTG	moderate	9	sORFs_org_Human	Intronic sORF	Brain, HEK293, HeLa, hES, RPE-1, U2OS
1315753	126	GTG ...	VQD ...	Ribo-seq	GTG		1	sORFs_org_Human	Intronic sORF	HEK293
1986	96	CTG ...	LIP ...	Ribo-seq	CTG	weak	13	sORFs_org_Human	Intronic sORF	Blood, Brain, HEK293, HeLa, hES, MDA-MB-231, RPE-1, U2OS
903177	42	GCC ...	ARL ...	Ribo-seq	GCC		1	sORFs_org_Human	Intronic sORF	Jurkat
1722417	36	CTG ...	LSA ...	Ribo-seq	CTG		4	sORFs_org_Human	Intronic sORF	Blood, HEK293, hES, MDA-MB-231
2309915	81	GTG ...	VCR ...	Ribo-seq	GTG		1	sORFs_org_Human	Intronic sORF	MDA-MB-231
1315755	150	GTG ...	VTE ...	Ribo-seq	GTG		2	sORFs_org_Human	Intronic sORF	HEK293, hES
2309917	87	CTG ...	LQV ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	MDA-MB-231

Export data