Transcript 193 | MetamORF

Transcript

ID CARD

MetamORF ID

193

ENST00000322238

Name

XPNPEP1-201

Strand

Biotype

protein_coding

Start-end positions

109864766-109923553

CDS Start-stop positions

109865184-109923433

CDS Relative positions

Sequences

Transcript sequence

GAC ...

Genome browsers

UCSC

Gene

HGNC:12822

Aliases

ENSG00000108039,
HGNC:12822, NCBI:7511, OFF:XPNPEP1,
XPNPEP, XPNPEP1, XPNPEPL,
XPNPEPL1

Chr 10

ORFs

64 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
279616	54	ATG ...	MWI ...	Ribo-seq	ATG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, hES, LCL
2302902	159	GTG ...	VRL ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative Downstream Overlapping sORF	MDA-MB-231
1501787	51	CTG ...	LTK ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, MDA-MB-231
279620	42	CTG ...	LRS ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa, LCL, MDA-MB-231
480850	42	ATG ...	MWS ...	Ribo-seq	ATG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, HEK293T, MDA-MB-231
898829	249	CTG ...	LRS ...	Ribo-seq	CTG		1	sORFs_org_Human	Overlapping sORF Upstream	Jurkat
279622	48	GTG ...	VNS ...	Ribo-seq	GTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL, MDA-MB-231
2302916	57	CTG ...	LTS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, MDA-MB-231
279626	60	CTG ...	LLL ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL, MDA-MB-231
278187	69	ATG ...	MGF ...	Ribo-seq	ATG	moderate	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HAP1, HeLa, LCL, MDA-MB-231, RPE-1
278198	45	CTG ...	LSA ...	Ribo-seq	CTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, LCL, MDA-MB-231, THP-1
279634	78	ATG ...	MRL ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HEK293T, LCL, MDA-MB-231
2092544	81	GTG ...	VQP ...	Ribo-seq	GTG		3	sORFs_org_Human	InCDS Overlapping sORF	HEK293, MDA-MB-231
2302921	72	TTG ...	LEE ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1501792	105	CTG ...	LRA ...	Ribo-seq	CTG		3	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, MDA-MB-231
2092134	57	CTG ...	LLY ...	Ribo-seq	CTG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231, RPE-1
2302905	63	ATG ...	MRV ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
279638	96	TTG ...	LWS ...	Ribo-seq	TTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, LCL, MDA-MB-231
279650	183	TTG ...	LSS ...	Ribo-seq	TTG		4	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, LCL, MDA-MB-231
2539852	42	TTG ...	LTP ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
279654	174	ATG ...	MLI ...	Ribo-seq	ATG		5	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, LCL, MDA-MB-231, RPE-1
2302907	69	ATG ...	MSM ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
279644	153	TTG ...	LLH ...	Ribo-seq	TTG		4	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, LCL, MDA-MB-231
898817	72	GGG ...	GRC ...	Ribo-seq	GGG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1720379	60	TTG ...	LGP ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231
278190	33	CTG ...	LHR ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL
631624	60	CTG ...	LTG ...	Ribo-seq	CTG	moderate	5	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, HFF, MDA-MB-231, THP-1
898819	96	GAT ...	DPG ...	Ribo-seq	GAT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2539860	60	GTG ...	VLT ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
278192	33	CTG ...	LKD ...	Ribo-seq	CTG	weak	4	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, LCL, MDA-MB-231
192	60	TTG ...	LTW ...	Ribo-seq	TTG	weak	5	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
279628	63	ATG ...	MLL ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL, MDA-MB-231
278185	30	ATG ...	MWI ...	Ribo-seq	ATG		12	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, THP-1
898815	33	ACA ...	TIQ ...	Ribo-seq	ACA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
898823	51	ACT ...	TQE ...	Ribo-seq	ACT		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
524795	30	TTG ...	LGP ...	Ribo-seq	TTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231, THP-1, U2OS
278194	42	GTG ...	VCF ...	Ribo-seq	GTG	weak	3	sORFs_org_Human	InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
1501789	54	CTG ...	LLT ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa, MDA-MB-231
279624	57	TTG ...	LLS ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL, MDA-MB-231
1501796	120	CTG ...	LDS ...	Ribo-seq	CTG		3	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, MDA-MB-231
900506	60	CAC ...	HWA ...	Ribo-seq	CAC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
279636	87	CTG ...	LPW ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, LCL, MDA-MB-231
279632	72	TTG ...	LRG ...	Ribo-seq	TTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, LCL, MDA-MB-231
480853	36	CTG ...	LPS ...	Ribo-seq	CTG	moderate	8	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, THP-1
631621	42	CTG ...	LEG ...	Ribo-seq	CTG	moderate	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, MDA-MB-231, RPE-1, THP-1
279630	78	TTG ...	LHR ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL, MDA-MB-231
279646	162	GTG ...	VSI ...	Ribo-seq	GTG		5	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, LCL, MDA-MB-231, RPE-1
1296221	51	CTG ...	LGH ...	Ribo-seq	CTG	strong	5	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, HEK293, HEK293T, RPE-1
631618	72	ATG ...	MLH ...	Ribo-seq	ATG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231, RPE-1, THP-1
1501798	126	TTG ...	LSL ...	Ribo-seq	TTG		3	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, MDA-MB-231
632259	246	CTG ...	LLS ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231, THP-1
279652	186	TTG ...	LLS ...	Ribo-seq	TTG		4	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, LCL, MDA-MB-231
2305513	87	CTG ...	LSA ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231
279642	144	GTG ...	VTV ...	Ribo-seq	GTG		4	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, LCL, MDA-MB-231
631626	75	ATG ...	MQP ...	Ribo-seq	ATG	moderate	8	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, HeLa, HFF, MDA-MB-231, RPE-1, THP-1
2302910	33	TTG ...	LPV ...	Ribo-seq	TTG	weak	2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, MDA-MB-231
2092132	54	CTG ...	LYA ...	Ribo-seq	CTG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231, RPE-1
279648	174	TTG ...	LFS ...	Ribo-seq	TTG		4	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, LCL, MDA-MB-231
279640	117	CTG ...	LRG ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, LCL, MDA-MB-231
1501794	111	ATG ...	MAL ...	Ribo-seq	ATG		3	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, MDA-MB-231
2092542	63	CTG ...	LEP ...	Ribo-seq	CTG		2	sORFs_org_Human	InCDS Overlapping sORF	HEK293
632257	231	CTG ...	LLQ ...	Ribo-seq	CTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, MDA-MB-231, RPE-1, THP-1
898821	102	CGA ...	RTD ...	Ribo-seq	CGA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
898813	51	TAT ...	YAL ...	Ribo-seq	TAT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat

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