Transcript 182424

Transcript

ID CARD

MetamORF ID

182424

ENST00000647444

Name

Strand

Biotype

protein_coding

Start-end positions

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

Genome browsers

Gene

HGNC:9635

Aliases

ENSG00000184007,
HGNC:9635, HU-PP-1, NCBI:8073,
OFF:PTP4A2, OV-1, PRL-2,
PRL2, ptp-IV1a, PTP4A,
PTP4A2, PTPCAAX2

Chr 1

ORFs

15 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1823956	30	ATG ...	MIR ...	Ribo-seq	ATG		1	sORFs_org_Human	sORF	HeLa
1823972	63	GTG ...	VLL ...	Ribo-seq	GTG		1	sORFs_org_Human	sORF	HeLa
1823930	51	CTG ...	LGF ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF	HeLa
883776	90	CGT ...	RFS ...	Ribo-seq	CGT		1	sORFs_org_Human	sORF	Jurkat
182423	120	ATG ...	MPS ...	Ribo-seq	ATG		5	sORFs_org_Human	sORF	BJ, HEK293, HeLa
182427	162	GTG ...	VTE ...	Ribo-seq	GTG		8	sORFs_org_Human	sORF	BJ, HEK293, HeLa, MM1S, RPE-1
1823966	54	GTG ...	VKR ...	Ribo-seq	GTG		1	sORFs_org_Human	sORF	HeLa
1823948	54	TTG ...	LLA ...	Ribo-seq	TTG		1	sORFs_org_Human	sORF	HeLa
1823962	45	TTG ...	LWK ...	Ribo-seq	TTG		1	sORFs_org_Human	sORF	HeLa
1823970	60	TTG ...	LLV ...	Ribo-seq	TTG		1	sORFs_org_Human	sORF	HeLa
1823946	84	TTG ...	LSH ...	Ribo-seq	TTG		1	sORFs_org_Human	sORF	HeLa
1823974	81	ATG ...	MSS ...	Ribo-seq	ATG		1	sORFs_org_Human	sORF	HeLa
1387747	165	CTG ...	LRR ...	Ribo-seq	CTG		4	sORFs_org_Human	sORF	HEK293, HeLa, RPE-1
1823942	78	ATG ...	MLF ...	Ribo-seq	ATG		1	sORFs_org_Human	sORF	HeLa
1823978	57	CTG ...	LNF ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF	HeLa

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