Transcript 1750 | MetamORF

Transcript

ID CARD

MetamORF ID

1750

ENST00000493228

Name

PCBD1-202

Strand

Biotype

processed_transcript

Start-end positions

70883932-70888254

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

HGNC:8646

Aliases

DCOH,
ENSG00000166228, HGNC:8646, NCBI:5092,
OFF:PCBD1, PCBD, PCBD1,
PCD

Chr 10

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
95284	51	CTG ...	LRN ...	Ribo-seq	CTG		22	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
97357	132	CTG ...	LLP ...	Ribo-seq	CTG		17	sORFs_org_Human	ncRNA sORF	BJ, guo_2014, HAP1, HEK293, HeLa, hES, HFF, RPE-1, U2OS
95276	42	CTG ...	LAS ...	Ribo-seq	CTG	strong	20	sORFs_org_Human	ncRNA sORF	Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
1756	153	CTG ...	LQA ...	Ribo-seq	CTG		30	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
1752	138	CTG ...	LDH ...	Ribo-seq	CTG		29	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
895894	90	CAT ...	HPE ...	Ribo-seq	CAT		1	sORFs_org_Human	ncRNA sORF	Jurkat
97349	96	CTG ...	LEG ...	Ribo-seq	CTG		8	sORFs_org_Human	ncRNA sORF	HAP1, HEK293, HEK293T, HeLa, hES
97351	111	GTG ...	VGW ...	Ribo-seq	GTG		9	sORFs_org_Human	ncRNA sORF	HEK293, hES, HFF, RPE-1
480464	33	CTG ...	LRR ...	Ribo-seq	CTG	moderate	16	sORFs_org_Human	ncRNA sORF	BJ, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
95282	30	CTG ...	LNG ...	Ribo-seq	CTG		16	sORFs_org_Human	ncRNA sORF	Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1
1749	111	GTG ...	VYN ...	Ribo-seq	GTG		28	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
97343	99	CTG ...	LDH ...	Ribo-seq	CTG		3	sORFs_org_Human	ncRNA sORF	HEK293
97346	114	CTG ...	LQA ...	Ribo-seq	CTG		6	sORFs_org_Human	ncRNA sORF	guo_2014, HEK293, HeLa
97359	156	CTG ...	LSA ...	Ribo-seq	CTG		21	sORFs_org_Human	ncRNA sORF	BJ, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, RPE-1, U2OS
404508	126	CCA ...	PNL ...	Ribo-seq	CCA		1	sORFs_org_Human	ncRNA sORF	HCT116
902149	129	CAT ...	HPE ...	Ribo-seq	CAT		1	sORFs_org_Human	ncRNA sORF	Jurkat
95286	120	GTG ...	VAL ...	Ribo-seq	GTG		6	sORFs_org_Human	ncRNA sORF	guo_2014, HEK293
895892	39	GCA ...	APM ...	Ribo-seq	GCA	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
95280	87	CTG ...	LST ...	Ribo-seq	CTG	moderate	27	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
895897	138	AAG ...	KAV ...	Ribo-seq	AAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
404506	87	CGT ...	RDA ...	Ribo-seq	CGT		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
97355	129	CTG ...	LPN ...	Ribo-seq	CTG		17	sORFs_org_Human	ncRNA sORF	BJ, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, RPE-1, U2OS
97339	33	ATG ...	MSV ...	Ribo-seq	ATG	weak	18	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
404510	165	GCA ...	AHR ...	Ribo-seq	GCA		6	sORFs_org_Human	ncRNA sORF	HCT116, HEK293, HeLa, Jurkat, THP-1
1754	159	GTG ...	VAL ...	Ribo-seq	GTG		30	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
406306	117	TTT ...	FNV ...	Ribo-seq	TTT		1	sORFs_org_Human	ncRNA sORF	HCT116
97353	120	CTG ...	LRA ...	Ribo-seq	CTG		13	sORFs_org_Human	ncRNA sORF	guo_2014, HAP1, HEK293, hES, HFF, RPE-1, U2OS

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