Transcript 1647 | MetamORF

Transcript

ID CARD

MetamORF ID

1647

ENST00000370508

Name

GOT1-201

Strand

Biotype

protein_coding

Start-end positions

99396870-99430593

CDS Start-stop positions

99397547-99430565

CDS Relative positions

Sequences

Transcript sequence

GAA ...

Genome browsers

UCSC

Gene

HGNC:4432

Aliases

AST1,
ENSG00000120053, GOT1, HGNC:4432,
NCBI:2805, OFF:GOT1

Chr 10

ORFs

46 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
277221	81	TTG ...	LSS ...	Ribo-seq	TTG	weak	13	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1
277219	66	GTG ...	VHT ...	Ribo-seq	GTG	weak	12	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1
98218	30	ATG ...	MTA ...	Ribo-seq	ATG	weak	1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
277229	39	ATG ...	MQR ...	Ribo-seq	ATG	moderate	13	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
480722	93	ATG ...	MLC ...	Ribo-seq	ATG	moderate	13	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1
935722	141	TTG ...	LPR ...	Ribo-seq	TTG		10	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HeLa, MDA-MB-231, RPE-1
281730	159	CTG ...	LWL ...	Ribo-seq	CTG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HeLa, LCL, MDA-MB-231, MM1S, RPE-1
1649	150	TTG ...	LTQ ...	Ribo-seq	TTG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
281735	78	CTG ...	LKA ...	Ribo-seq	CTG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, HEK293, hES, LCL, MDA-MB-231, RPE-1
935720	117	CTG ...	LSW ...	Ribo-seq	CTG		11	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HeLa, MDA-MB-231, RPE-1
1202642	30	GTG ...	VHF ...	Ribo-seq	GTG	weak	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HAP1, HeLa, HFF, MDA-MB-231, RPE-1
281732	57	GTG ...	VPS ...	Ribo-seq	GTG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
1646	123	CTG ...	LET ...	Ribo-seq	CTG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
277223	84	TTG ...	LLS ...	Ribo-seq	TTG	weak	12	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1
2309031	39	TTG ...	LGM ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231, RPE-1
898026	66	GCG ...	ALV ...	Ribo-seq	GCG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
277225	96	CTG ...	LSS ...	Ribo-seq	CTG	weak	11	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1
935724	180	TTG ...	LIP ...	Ribo-seq	TTG		12	sORFs_org_Human	Overlapping sORF Upstream	BJ, Blood, Brain, HAP1, HEK293, HeLa, MDA-MB-231, MM1S, RPE-1
277227	102	ATG ...	MLL ...	Ribo-seq	ATG	moderate	10	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1
1721941	72	CTG ...	LSS ...	Ribo-seq	CTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231, RPE-1
281726	141	CTG ...	LRA ...	Ribo-seq	CTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HEK293, HeLa, LCL, MDA-MB-231, MM1S, RPE-1
277234	78	CTG ...	LLV ...	Ribo-seq	CTG	weak	15	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1
406202	81	TGT ...	CLK ...	Ribo-seq	TGT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
281743	186	TTG ...	LLP ...	Ribo-seq	TTG		10	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
1092962	45	ATG ...	MKS ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1721937	45	TTG ...	LPL ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
96092	63	TTG ...	LVQ ...	Ribo-seq	TTG		20	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
404959	165	GCC ...	AIR ...	Ribo-seq	GCC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
2309029	33	ATG ...	MTA ...	Ribo-seq	ATG		3	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231, RPE-1
100265	42	CTG ...	LCP ...	Ribo-seq	CTG		13	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
281722	33	CTG ...	LSS ...	Ribo-seq	CTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HEK293, HeLa, LCL, MDA-MB-231, MM1S, RPE-1
281737	84	TTG ...	LCL ...	Ribo-seq	TTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, HEK293, LCL, MDA-MB-231, RPE-1
898024	54	TGG ...	WNK ...	Ribo-seq	TGG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
281728	153	TTG ...	LEK ...	Ribo-seq	TTG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HeLa, LCL, MDA-MB-231, MM1S, RPE-1
100269	96	CTG ...	LPT ...	Ribo-seq	CTG		11	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HeLa, MDA-MB-231, RPE-1
277216	45	TTG ...	LTQ ...	Ribo-seq	TTG	moderate	12	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
98208	51	CTG ...	LGL ...	Ribo-seq	CTG	moderate	12	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
277239	54	GTG ...	VCN ...	Ribo-seq	GTG	moderate	8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, LCL, MDA-MB-231, MM1S, RPE-1
277214	42	CTG ...	LCP ...	Ribo-seq	CTG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
281724	57	TTG ...	LWP ...	Ribo-seq	TTG		10	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1
1721939	57	GTG ...	VLL ...	Ribo-seq	GTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231, RPE-1
277232	75	CTG ...	LVL ...	Ribo-seq	CTG	moderate	13	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
277236	90	CTG ...	LCF ...	Ribo-seq	CTG	moderate	12	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
3303652	1242	ATG ...	MAP ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
96090	48	CTG ...	LGC ...	Ribo-seq	CTG	moderate	17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HeLa, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
281739	105	ATG ...	MPG ...	Ribo-seq	ATG		9	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain, Brain_tumor, HAP1, HEK293, HeLa, HFF, LCL, MDA-MB-231, RPE-1

Export data