Transcript 1625 | MetamORF

Transcript

ID CARD

MetamORF ID

1625

ENST00000355839

Name

MMS19-202

Strand

Biotype

protein_coding

Start-end positions

97458326-97498609

CDS Start-stop positions

97458692-97498384

CDS Relative positions

Sequences

Transcript sequence

AAT ...

Genome browsers

UCSC

Gene

HGNC:13824

Aliases

CIAO4,
ENSG00000155229, HGNC:13824, hMMS19,
MET18, MMS19, MMS19L,
NCBI:64210, OFF:MMS19

Chr 10

ORFs

97 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1204141	60	TTG ...	LQD ...	Ribo-seq	TTG		2	sORFs_org_Human	InCDS Overlapping sORF	HAP1, MDA-MB-231
1202604	30	CTG ...	LSL ...	Ribo-seq	CTG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, HEK293, HeLa, MDA-MB-231
2301138	48	ATG ...	MYC ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	hES, MDA-MB-231
281706	30	GTG ...	VPS ...	Ribo-seq	GTG		4	sORFs_org_Human	InCDS Overlapping sORF	HeLa, LCL, MDA-MB-231
2301106	117	CTG ...	LCG ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2308885	57	CTG ...	LAW ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2308909	126	GTG ...	VHL ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2308901	90	ATG ...	MYC ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
277147	42	ATG ...	MAS ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL, MDA-MB-231
1721895	156	GTG ...	VTL ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
2301144	78	CTG ...	LPG ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1816876	30	CTG ...	LAA ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	Alternative Downstream Overlapping sORF	HeLa
2308891	105	TTG ...	LCP ...	Ribo-seq	TTG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
897959	282	CGG ...	RLW ...	Ribo-seq	CGG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
277157	102	GTG ...	VLS ...	Ribo-seq	GTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, LCL, MDA-MB-231, THP-1
2308905	108	GTG ...	VTL ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2301118	81	CTG ...	LPQ ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, hES, MDA-MB-231
1985636	60	TTG ...	LHC ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa
2301104	66	GTG ...	VWC ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
1816883	42	ATG ...	MRT ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa
1719092	30	ATG ...	MVS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
2301112	54	ATG ...	MYL ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
1631	81	CTG ...	LML ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL
2308883	156	ATG ...	MYL ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
897947	81	AGC ...	SCI ...	Ribo-seq	AGC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1818390	66	GTG ...	VPS ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa
1135696	36	CTG ...	LQG ...	Ribo-seq	CTG		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
2301156	51	ATG ...	MGP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2539179	48	CTG ...	LFL ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
2301116	72	CTG ...	LPL ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, hES, MDA-MB-231
2308889	87	ATG ...	MAT ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
2301150	111	GTG ...	VPS ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
281697	99	ATG ...	MTR ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative Downstream Overlapping sORF	LCL
2308894	144	CTG ...	LSV ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
897955	69	TGG ...	WYP ...	Ribo-seq	TGG	weak	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
897942	75	CCC ...	PSS ...	Ribo-seq	CCC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
2301108	72	CTG ...	LTV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
1719077	42	TTG ...	LPA ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
1202610	48	CTG ...	LSE ...	Ribo-seq	CTG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, MDA-MB-231
2308903	102	CTG ...	LSP ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2301120	84	CTG ...	LLP ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, hES, MDA-MB-231
2301148	90	CTG ...	LQV ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2301140	60	CTG ...	LSP ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
281704	105	TTG ...	LAE ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
524429	42	GTG ...	VLC ...	Ribo-seq	GTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, hES, U2OS
277151	42	CTG ...	LPW ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, LCL, MDA-MB-231
1627	75	CTG ...	LRT ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, LCL
2308920	138	CTG ...	LCL ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
631328	39	ATG ...	MIP ...	Ribo-seq	ATG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231, RPE-1, THP-1
2308927	78	GTG ...	VPY ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2308907	120	CTG ...	LPG ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1816868	42	TTG ...	LSH ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Downstream sORF	HeLa
1816874	33	CTG ...	LSP ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream Overlapping sORF	HeLa
897944	75	ATC ...	INT ...	Ribo-seq	ATC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2308879	84	CTG ...	LSG ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1204143	72	CTG ...	LPS ...	Ribo-seq	CTG		1	sORFs_org_Human	InCDS Overlapping sORF	HAP1
277149	45	CTG ...	LMA ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL, MDA-MB-231
1816870	45	CTG ...	LLS ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Downstream sORF	HeLa
1816872	123	CTG ...	LGL ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
2301122	63	ATG ...	MAT ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
2308899	168	TTG ...	LHN ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1721887	93	ATG ...	MPK ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	Blood
277167	33	GTG ...	VPS ...	Ribo-seq	GTG		3	sORFs_org_Human	InCDS Overlapping sORF	HeLa, LCL
277165	36	ATG ...	MLA ...	Ribo-seq	ATG	weak	5	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231
1719079	69	CTG ...	LVF ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
2952280	36	CTG ...	LLF ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	hES
277159	117	ATG ...	MLP ...	Ribo-seq	ATG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231, THP-1
2093076	51	CTG ...	LCW ...	Ribo-seq	CTG		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
897949	93	GCA ...	ASL ...	Ribo-seq	GCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2301124	81	TTG ...	LCP ...	Ribo-seq	TTG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
1721889	102	GTG ...	VLA ...	Ribo-seq	GTG		1	sORFs_org_Human	InCDS Overlapping sORF	Blood
2308911	132	CTG ...	LQV ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2308931	111	CTG ...	LPR ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1503182	66	CTG ...	LKT ...	Ribo-seq	CTG		2	sORFs_org_Human	InCDS Overlapping sORF	BJ, MDA-MB-231
1721893	51	TTG ...	LPW ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
1721891	42	CTG ...	LCR ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293
277161	120	ATG ...	MSP ...	Ribo-seq	ATG	moderate	4	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HeLa, LCL, MDA-MB-231
277163	30	GTG ...	VFV ...	Ribo-seq	GTG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, LCL, MDA-MB-231, RPE-1
1629	78	ATG ...	MLR ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, LCL
1721899	51	CTG ...	LAT ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
2301142	66	GTG ...	VTL ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1204145	75	CTG ...	LLP ...	Ribo-seq	CTG		1	sORFs_org_Human	InCDS Overlapping sORF	HAP1
1719081	72	TTG ...	LLV ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
901985	99	CCC ...	PSS ...	Ribo-seq	CCC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
2308913	153	GTG ...	VPS ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2308922	144	CTG ...	LFL ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
281699	75	CTG ...	LWT ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
2308924	168	GTG ...	VWP ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2301146	84	GTG ...	VHL ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1624	63	TTG ...	LTP ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa
1202608	54	ATG ...	MRC ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, MDA-MB-231
2308929	102	CTG ...	LWR ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2308896	147	TTG ...	LLS ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2301102	90	CTG ...	LPS ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2308881	132	CTG ...	LYS ...	Ribo-seq	CTG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
277155	99	CTG ...	LSA ...	Ribo-seq	CTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, hES, LCL, MDA-MB-231, THP-1
277153	69	CTG ...	LYQ ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	InCDS Overlapping sORF	Blood, LCL, MDA-MB-231

Export data