Transcript 1591 | MetamORF

Transcript

ID CARD

MetamORF ID

1591

ENST00000329399

Name

PDLIM1-201

Strand

Biotype

protein_coding

Start-end positions

95237572-95291024

CDS Start-stop positions

95237925-95290915

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

HGNC:2067

Aliases

CLIM1,
CLP-36, CLP36, ENSG00000107438,
hCLIM1, HGNC:2067, NCBI:9124,
OFF:PDLIM1, PDLIM1

Chr 10

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1597	39	CTG ...	LLP ...	Ribo-seq	CTG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
281504	75	CTG ...	LRR ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293T, LCL, MDA-MB-231, MM1S
1607	171	GTG ...	VPC ...	Ribo-seq	GTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
281500	60	ATG ...	MLR ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, LCL, MM1S
276766	30	ATG ...	MYW ...	Ribo-seq	ATG	weak	1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
281502	66	TTG ...	LEM ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, LCL
1590	39	GTG ...	VTN ...	Ribo-seq	GTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1
1599	57	ATG ...	MPW ...	Ribo-seq	ATG		15	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
281497	30	GTG ...	VAL ...	Ribo-seq	GTG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, LCL, MDA-MB-231, MM1S, RPE-1
1601	81	CTG ...	LKI ...	Ribo-seq	CTG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
281508	198	ATG ...	MSP ...	Ribo-seq	ATG		3	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, LCL, MM1S
1605	147	CTG ...	LPP ...	Ribo-seq	CTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HEK293T, HeLa, HFF, MDA-MB-231, RPE-1
2093048	132	CTG ...	LPG ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HFF, RPE-1
95912	30	ATG ...	MCA ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
3303448	990	ATG ...	MTT ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
281506	90	CTG ...	LSL ...	Ribo-seq	CTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, MM1S, RPE-1
1603	96	CTG ...	LAS ...	Ribo-seq	CTG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
1595	36	CTG ...	LPA ...	Ribo-seq	CTG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
1092902	78	ATG ...	MLS ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF

Export data