Transcript 158 | MetamORF

Transcript

ID CARD

MetamORF ID

158

ENST00000471061

Name

PDCD11-203

Strand

Biotype

retained_intron

Start-end positions

103403227-103405372

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TCT ...

Genome browsers

UCSC

Gene

HGNC:13408

Aliases

ALG-4,
ENSG00000148843, HGNC:13408, KIAA0185,
NCBI:22984, NFBP, OFF:PDCD11,
PDCD11, RRP5

Chr 10

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
524779	69	CTG ...	LNP ...	Ribo-seq	CTG	weak	5	sORFs_org_Human	Intronic sORF	HEK293, hES, U2OS
98560	120	GTG ...	VSS ...	Ribo-seq	GTG	moderate	9	sORFs_org_Human	Intronic sORF	BJ, HEK293, HeLa, hES, MDA-MB-231, U2OS
2539754	42	CTG ...	LSA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Intronic sORF	HEK293
157	162	TTG ...	LPE ...	Ribo-seq	TTG	weak	9	sORFs_org_Human	Intronic sORF	BJ, HEK293, HeLa, hES, MDA-MB-231, THP-1
2539752	45	GTG ...	VLS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Intronic sORF	HEK293
524777	75	CTG ...	LSL ...	Ribo-seq	CTG	moderate	6	sORFs_org_Human	Intronic sORF	HEK293, hES, THP-1, U2OS
631589	30	CTG ...	LNF ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	Intronic sORF	MDA-MB-231, THP-1
278020	96	ATG ...	MCG ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human	Intronic sORF	HEK293, LCL, MDA-MB-231
898701	159	CCT ...	PEL ...	Ribo-seq	CCT	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
160	135	CTG ...	LVR ...	Ribo-seq	CTG	strong	7	sORFs_org_Human	Intronic sORF	BJ, HEK293, HeLa, hES, MDA-MB-231
524775	111	CTG ...	LGI ...	Ribo-seq	CTG	strong	8	sORFs_org_Human	Intronic sORF	BJ, HEK293, HeLa, hES, MDA-MB-231, U2OS
524772	123	GTG ...	VVS ...	Ribo-seq	GTG	moderate	7	sORFs_org_Human	Intronic sORF	BJ, HEK293, HeLa, hES, MDA-MB-231, U2OS

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