Transcript 155 | MetamORF

Transcript

ID CARD

MetamORF ID

155

ENST00000337003

Name

USMG5-202

Strand

Biotype

protein_coding

Start-end positions

103389050-103396466

CDS Start-stop positions

103392194-103392457

CDS Relative positions

Sequences

Transcript sequence

CCG ...

Genome browsers

UCSC

Gene

HGNC:30889

Aliases

ATP5MD,
bA792D24.4, DAPIT, ENSG00000173915,
HGNC:30889, MGC14697, NCBI:84833,
OFF:ATP5MD, USMG5

Chr 10

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
405221	117	CTG ...	LRN ...	Ribo-seq	CTG		2	sORFs_org_Human	sORF Upstream	HCT116, Jurkat
2678932	75	GTG ...	VVD ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	Alternative sORF Upstream	RPE-1
2679775	126	CTG ...	LRN ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative sORF Upstream	RPE-1
154	33	GTG ...	VYW ...	Ribo-seq	GTG	moderate	31	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
405223	135	TTC ...	FVE ...	Ribo-seq	TTC		4	sORFs_org_Human	sORF Upstream	BJ, HCT116, HEK293, Jurkat
405217	57	AAC ...	NSS ...	Ribo-seq	AAC		5	sORFs_org_Human	Alternative Downstream Overlapping sORF	HCT116, HEK293, HeLa, Jurkat, THP-1
2679777	153	GTG ...	VVT ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative sORF Upstream	RPE-1
2679773	117	TTG ...	LRL ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative sORF Upstream	RPE-1
1313825	144	GTG ...	VVT ...	Ribo-seq	GTG		3	sORFs_org_Human	sORF Upstream	HEK293, HeLa, MM1S
898687	126	GGA ...	GHQ ...	Ribo-seq	GGA		1	sORFs_org_Human	sORF Upstream	Jurkat
405219	114	GGC ...	GHI ...	Ribo-seq	GGC		4	sORFs_org_Human	Alternative Downstream Overlapping sORF	HCT116, HeLa, Jurkat, THP-1
405777	144	TTC ...	FVE ...	Ribo-seq	TTC		1	sORFs_org_Human	Alternative sORF Upstream	HCT116
2615889	138	ACA ...	TFV ...	Ribo-seq	ACA		2	sORFs_org_Human	sORF Upstream	HeLa, THP-1
278013	87	GTG ...	VAS ...	Ribo-seq	GTG	strong	2	sORFs_org_Human	Alternative sORF Upstream	LCL, RPE-1

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