Transcript 1537 | MetamORF

Transcript

ID CARD

MetamORF ID

1537

ENST00000358935

Name

MARCH5-201

Strand

Biotype

protein_coding

Start-end positions

92291163-92353964

CDS Start-stop positions

92291495-92351207

CDS Relative positions

Sequences

Transcript sequence

TCT ...

Genome browsers

UCSC

Gene

HGNC:26025

Aliases

ENSG00000198060,
FLJ20445, HGNC:26025, MARCH-V,
MARCH5, MITOL, NCBI:54708,
OFF:MARCH5, RNF153

Chr 10

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
901839	60	GCC ...	AGP ...	Ribo-seq	GCC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
901841	84	ACC ...	TKP ...	Ribo-seq	ACC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1816738	48	ATG ...	MCL ...	Ribo-seq	ATG	moderate	1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
897295	162	GCC ...	AGP ...	Ribo-seq	GCC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1539	156	TTG ...	LSL ...	Ribo-seq	TTG		27	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
897293	189	GCC ...	AVC ...	Ribo-seq	GCC		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	Jurkat
901837	132	GGG ...	GST ...	Ribo-seq	GGG		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	Jurkat
1545	138	TTG ...	LSG ...	Ribo-seq	TTG		27	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
2300286	36	ATG ...	MLW ...	Ribo-seq	ATG	weak	1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
897291	267	GGG ...	GST ...	Ribo-seq	GGG		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	Jurkat
901845	63	TGG ...	WTE ...	Ribo-seq	TGG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
897289	138	CGG ...	RTG ...	Ribo-seq	CGG	weak	1	sORFs_org_Human	Alternative sORF Upstream	Jurkat
4544280	36	TGT ...	CCI ...	Ribo-seq MS	TGT	weak	1	Laumont2016	Alternative Downstream sORF	B_cell
2300284	66	ATG ...	MKS ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
631082	75	ATG ...	MGE ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
901843	51	AGC ...	SPT ...	Ribo-seq	AGC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1547	111	GTG ...	VRR ...	Ribo-seq	GTG		28	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
404791	153	AGC ...	SPT ...	Ribo-seq	AGC		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, Jurkat
281373	57	GTG ...	VLT ...	Ribo-seq	GTG		7	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, HeLa, LCL, MDA-MB-231, RPE-1
1543	144	CTG ...	LAL ...	Ribo-seq	CTG		27	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
897287	159	TGG ...	WTG ...	Ribo-seq	TGG	weak	2	sORFs_org_Human	Alternative sORF Upstream	BJ, Jurkat
1718767	60	ATG ...	MSL ...	Ribo-seq	ATG	moderate	1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
897297	219	ACC ...	TKP ...	Ribo-seq	ACC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1541	150	CTG ...	LGL ...	Ribo-seq	CTG		27	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1536	162	GTG ...	VLL ...	Ribo-seq	GTG		27	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS

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