Transcript 1506 | MetamORF

Transcript

ID CARD

MetamORF ID

1506

ENST00000328142

Name

ATAD1-202

Strand

Biotype

protein_coding

Start-end positions

87753117-87814882

CDS Start-stop positions

87754687-87814599

CDS Relative positions

Sequences

Transcript sequence

GTA ...

Genome browsers

UCSC

Gene

HGNC:25903

Aliases

ATAD1,
ENSG00000138138, FLJ14600, HGNC:25903,
NCBI:84896, OFF:ATAD1

Chr 10

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
901759	90	ATG ...	MLI ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1133764	84	GTG ...	VVW ...	Ribo-seq	GTG	moderate	9	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, RPE-1
3303307	1086	ATG ...	MVH ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
1816704	69	TTG ...	LCP ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1718669	51	GTG ...	VLE ...	Ribo-seq	GTG		2	sORFs_org_Human	InCDS Overlapping sORF	Blood, hES
896962	36	GAA ...	ECL ...	Ribo-seq	GAA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1816708	54	GTG ...	VVL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
896966	51	AGC ...	SHD ...	Ribo-seq	AGC	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1505	36	ATG ...	MDW ...	Ribo-seq	ATG		17	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
896958	39	ATG ...	MLI ...	Ribo-seq	ATG		3	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, Jurkat
276043	48	ATG ...	MEN ...	Ribo-seq	ATG	strong	3	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, LCL
95789	33	ATG ...	MQL ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1718671	66	ATG ...	MLP ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	Blood
524081	39	TTG ...	LPR ...	Ribo-seq	TTG	moderate	13	sORFs_org_Human	InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1, U2OS
1816702	51	GTG ...	VNF ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1816706	48	ATG ...	MYI ...	Ribo-seq	ATG	weak	2	sORFs_org_Human Johnstone2016	Alternative Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
896964	39	CAT ...	HSN ...	Ribo-seq	CAT	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
524079	30	GTG ...	VSR ...	Ribo-seq	GTG	moderate	8	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, MDA-MB-231, RPE-1, THP-1, U2OS
896960	42	CCT ...	PKR ...	Ribo-seq	CCT	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
630990	30	ATG ...	MGL ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF

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