Transcript 14404 | MetamORF

Transcript

ID CARD

MetamORF ID

14404

ENST00000549528

Name

MCRS1-210

Strand

Biotype

protein_coding

Start-end positions

49564763-49567850

CDS Start-stop positions

-49566731

CDS Relative positions

Sequences

Transcript sequence

CCG ...

Genome browsers

UCSC

Gene

HGNC:6960

Aliases

ENSG00000187778,
HGNC:6960, ICP22BP, INO80Q,
MCRS1, MCRS2, MSP58,
NCBI:10445, OFF:MCRS1, P78

Chr 12

ORFs

10 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
412964	114	ACC ...	TWS ...	Ribo-seq	ACC		2	sORFs_org_Human	sORF	HCT116, Jurkat
307555	96	TTG ...	LVL ...	Ribo-seq	TTG		10	sORFs_org_Human	sORF	Blood, HAP1, HEK293, HEK293T, HeLa, LCL, loayza_puch_2016, MM1S, RPE-1
412958	45	TTT ...	FGT ...	Ribo-seq	TTT		1	sORFs_org_Human	sORF	HCT116
14403	87	GTG ...	VGP ...	Ribo-seq	GTG		30	sORFs_org_Human	sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
412962	96	GAT ...	DEP ...	Ribo-seq	GAT		4	sORFs_org_Human	sORF	HCT116, HEK293, Jurkat
307557	120	CTG ...	LWV ...	Ribo-seq	CTG		3	sORFs_org_Human	sORF	HEK293T, HeLa, LCL
14408	144	TTG ...	LQN ...	Ribo-seq	TTG		32	sORFs_org_Human	sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
412956	39	ACT ...	TVR ...	Ribo-seq	ACT		2	sORFs_org_Human	sORF	HCT116, Jurkat
14406	99	TTG ...	LDE ...	Ribo-seq	TTG		30	sORFs_org_Human	sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
412960	90	CCT ...	PVG ...	Ribo-seq	CCT		2	sORFs_org_Human	sORF	HCT116, Jurkat

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