Metam
ORF

Logo

Transcript

Transcript

ID CARD

MetamORF ID

1425

ID

ENST00000616246

Name

POLR3A-205

Strand

-

Biotype

protein_coding

Start-end positions

77969251-77985320

CDS Start-stop positions

77970039-77982694

CDS Relative positions

-

Sequences

Transcript sequence

CTG ...

Genome browsers

UCSC

Gene

ID

HGNC:30074

Aliases

ENSG00000148606,
HGNC:30074, hRPC155, NCBI:11128,
OFF:POLR3A, POLR3A, RPC1,
RPC155


Chr 10

ORFs

26 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

3199827 213

CAG ...

QMT ...

Ribo-seq
 CAG 1 sORFs_org_Human
    Alternative
    sORF
    Upstream
 HEK293
901673 93

GCA ...

AQL ...

Ribo-seq
 GCA 1 sORFs_org_Human
    Alternative
    sORF
    Upstream
 Jurkat
1135548 246

CTG ...

LCA ...

Ribo-seq
 CTG 4 sORFs_org_Human
    Alternative
    sORF
    Upstream
 HEK293, hES
896632 177

AGC ...

SIG ...

Ribo-seq
 AGC 1 sORFs_org_Human
    Alternative
    sORF
    Upstream
 Jurkat
1135544 180

GTG ...

VAS ...

Ribo-seq
 GTG 2 sORFs_org_Human
    Alternative
    sORF
    Upstream
 HEK293, hES
2299067 30

ATG ...

MTT ...

Ribo-seq
 ATG 1 sORFs_org_Human
    Alternative
    sORF
    Upstream
 MDA-MB-231
1135546 204

CTG ...

LKT ...

Ribo-seq
 CTG 2 sORFs_org_Human
    Alternative
    sORF
    Upstream
 HEK293, hES
901675 189

TTT ...

FAG ...

Ribo-seq
 TTT 1 sORFs_org_Human
    Alternative
    sORF
    Upstream
 Jurkat
3199446 156

CAG ...

QMT ...

Ribo-seq
 CAG 1 sORFs_org_Human
    Alternative
    sORF
    Upstream
 HEK293
901677 234

AGC ...

SIG ...

Ribo-seq
 AGC 1 sORFs_org_Human
    Alternative
    sORF
    Upstream
 Jurkat
281063 123

TTG ...

LLL ...

Ribo-seq
 TTG 1 sORFs_org_Human
    Alternative
    sORF
    Upstream
 LCL
1135540 153

GTG ...

VPR ...

Ribo-seq
 GTG 3 sORFs_org_Human
    Alternative
    sORF
    Upstream
 HEK293, hES
1135542 159

CTG ...

LGV ...

Ribo-seq
 CTG 2 sORFs_org_Human
    Alternative
    sORF
    Upstream
 HEK293, hES
896630 132

TTT ...

FAG ...

Ribo-seq
 TTT 1 sORFs_org_Human
    Alternative
    sORF
    Upstream
 Jurkat
1718428 33

CTG ...

LHI ...

Ribo-seq
 CTG weak 3 sORFs_org_Human
    sORF
    Upstream
 Blood, HeLa, MDA-MB-231
896626 42

GCA ...

AEW ...

Ribo-seq
 GCA moderate 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
 Jurkat
275737 57

GTG ...

VSP ...

Ribo-seq
 GTG weak 2 sORFs_org_Human
    Alternative
    Overlapping
    sORF
    Upstream
 HEK293, LCL
275741 51

ATG ...

MTA ...

Ribo-seq
 ATG weak 1 sORFs_org_Human
    Alternative
    sORF
    Upstream
 LCL
275739 39

CTG ...

LLY ...

Ribo-seq
 CTG weak 2 sORFs_org_Human
    Alternative
    sORF
    Upstream
 Blood, LCL
896628 99

GCA ...

AQL ...

Ribo-seq
 GCA 1 sORFs_org_Human
    sORF
    Upstream
 Jurkat
2299064 42

GTG ...

VKS ...

Ribo-seq
 GTG moderate 2 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
 HEK293, MDA-MB-231
1135550 255

GTG ...

VGA ...

Ribo-seq
 GTG 4 sORFs_org_Human
    Alternative
    sORF
    Upstream
 HEK293, hES
2538336 66

CTG ...

LWC ...

Ribo-seq
 CTG moderate 1 sORFs_org_Human
    Alternative
    Overlapping
    sORF
    Upstream
 HEK293
3217809 39

GTG ...

VIT ...

Ribo-seq
 GTG moderate 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
 HeLa
1424 30

ATG ...

MTT ...

Ribo-seq
 ATG 2 sORFs_org_Human
    Alternative
    sORF
    Upstream
 HEK293, MDA-MB-231
281061 75

ATG ...

MRW ...

Ribo-seq
 ATG 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
 LCL

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

B_cell

BJ

Blood

Brain

Brain_tumor

Breast

Flp-In_T-REx-293

guo_2014

HAP1

HCT116

HEK293

HEK293T

HeLa

hES

HFF

Jurkat

LCL

loayza_puch_2016

MDA-MB-231

MM1S

Monocyte

NCCIT

RPE-1

Skeletal_muscle

THP-1

U2OS