Transcript 1410 | MetamORF

Transcript

ID CARD

MetamORF ID

1410

ENST00000379562

Name

KIN-201

Strand

Biotype

protein_coding

Start-end positions

7750962-7787981

CDS Start-stop positions

7756080-7787933

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

HGNC:6327

Aliases

ENSG00000151657,
HGNC:6327, KIN, KIN17,
NCBI:22944, OFF:KIN, Rts2

Chr 10

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
281044	81	CTG ...	LIL ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
1715927	102	ATG ...	MAL ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
2308015	42	CTG ...	LPE ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
272759	48	CTG ...	LIL ...	Ribo-seq	CTG		1	sORFs_org_Human	InCDS Overlapping sORF	LCL
272757	111	GTG ...	VQS ...	Ribo-seq	GTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
901658	54	GCT ...	AHP ...	Ribo-seq	GCT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
281033	48	ATG ...	MRR ...	Ribo-seq	ATG		3	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, hES, HFF, LCL
2542156	30	ATG ...	MMK ...	Ribo-seq	ATG		2	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1715929	132	CTG ...	LPW ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative Overlapping sORF Upstream	Blood, HEK293, MDA-MB-231
1409	63	TTG ...	LKR ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
281042	87	CTG ...	LHW ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
893264	135	CGA ...	RIS ...	Ribo-seq	CGA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1721604	117	ATG ...	MAL ...	Ribo-seq	ATG		3	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
272751	42	ATG ...	MMK ...	Ribo-seq	ATG	weak	4	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, LCL, MDA-MB-231
281040	78	ATG ...	MKS ...	Ribo-seq	ATG		4	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, Jurkat, LCL, MDA-MB-231
893262	72	TGT ...	CLQ ...	Ribo-seq	TGT	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
901662	99	GTA ...	VCP ...	Ribo-seq	GTA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1721606	246	CTG ...	LPW ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative Overlapping sORF Upstream	Blood, MDA-MB-231
272753	45	TTG ...	LMM ...	Ribo-seq	TTG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
1092043	39	ATG ...	MKK ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
272743	33	ATG ...	MEA ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1721602	72	TTG ...	LAL ...	Ribo-seq	TTG		3	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
901660	63	GAG ...	EHV ...	Ribo-seq	GAG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
272755	84	CTG ...	LVY ...	Ribo-seq	CTG	strong	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL
893266	84	GTA ...	VCP ...	Ribo-seq	GTA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1715925	45	TTG ...	LST ...	Ribo-seq	TTG	moderate	3	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231

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