Transcript 13848 | MetamORF

Transcript

ID CARD

MetamORF ID

13848

ENST00000450008

Name

ANAPC7-201

Strand

Biotype

protein_coding

Start-end positions

110375477-110403730

CDS Start-stop positions

110376062-110403729

CDS Relative positions

Sequences

Transcript sequence

GAT ...

Genome browsers

UCSC

Gene

HGNC:17380

Aliases

ANAPC7,
APC7, ENSG00000196510, HGNC:17380,
NCBI:51434, OFF:ANAPC7

Chr 12

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1833152	48	TTG ...	LLY ...	Ribo-seq	TTG		2	sORFs_org_Human	InCDS Overlapping sORF	HeLa, MDA-MB-231
1603200	39	TTG ...	LMG ...	Ribo-seq	TTG		3	sORFs_org_Human	InCDS Overlapping sORF	Flp-In_T-REx-293, HeLa, MDA-MB-231
1740650	51	TTG ...	LCT ...	Ribo-seq	TTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231
643376	48	ATG ...	MLL ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1740642	81	CTG ...	LIS ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
1740640	72	ATG ...	MQN ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
1097246	39	GTG ...	VTT ...	Ribo-seq	GTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231
644253	114	TTG ...	LRT ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231, THP-1
1740638	51	CTG ...	LAV ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
1300237	57	ATG ...	MLL ...	Ribo-seq	ATG		8	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HEK293T, HeLa, HFF, MDA-MB-231
13847	36	ATG ...	MGS ...	Ribo-seq	ATG		4	sORFs_org_Human	InCDS Overlapping sORF	Flp-In_T-REx-293, HEK293, HeLa, MDA-MB-231
303846	39	ATG ...	MYM ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
644251	105	TTG ...	LDA ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231, THP-1
306287	42	CTG ...	LVT ...	Ribo-seq	CTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231
1096826	42	CTG ...	LSM ...	Ribo-seq	CTG	weak	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231
3331099	1614	ATG ...	MDP ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
303872	45	ATG ...	MQI ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1603202	54	ATG ...	MPL ...	Ribo-seq	ATG		4	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Blood, Brain_tumor, Flp-In_T-REx-293, HEK293, HeLa, HFF, MDA-MB-231
1051718	36	ATG ...	MSI ...	Ribo-seq	ATG	weak	7	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
306289	75	CTG ...	LCG ...	Ribo-seq	CTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1
306291	57	CTG ...	LEI ...	Ribo-seq	CTG		9	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293T, HeLa, hES, HFF, Jurkat, LCL, MDA-MB-231, THP-1
303841	48	CTG ...	LCP ...	Ribo-seq	CTG	weak	10	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
644255	117	ATG ...	MLR ...	Ribo-seq	ATG		5	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231, THP-1

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