Transcript 13618 | MetamORF

Transcript

ID CARD

MetamORF ID

13618

ENST00000546098

Name

ZNF664-214

Strand

Biotype

processed_transcript

Start-end positions

123973485-124011703

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGG ...

Genome browsers

UCSC

Gene

HGNC:25406

Aliases

DKFZp761B128,
ENSG00000179195, HGNC:25406, NCBI:144348,
OFF:ZNF664, ZFOC1, ZNF176,
ZNF664

Chr 12

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
111048	120	GTG ...	VCF ...	Ribo-seq	GTG		18	sORFs_org_Human	ncRNA sORF	BJ, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
1834220	165	TTG ...	LFD ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	HeLa
412636	51	GGA ...	GRL ...	Ribo-seq	GGA		1	sORFs_org_Human	ncRNA sORF	HCT116
705862	66	TGT ...	CGP ...	Ribo-seq	TGT		1	sORFs_org_Human	ncRNA sORF	Jurkat
13617	30	CTG ...	LLP ...	Ribo-seq	CTG	moderate	21	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, MM1S, RPE-1, THP-1, U2OS
1143715	30	TTG ...	LGV ...	Ribo-seq	TTG		2	sORFs_org_Human	ncRNA sORF	HEK293, HeLa
111050	66	GTG ...	VMR ...	Ribo-seq	GTG	weak	25	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
705858	117	AGG ...	RRA ...	Ribo-seq	AGG		1	sORFs_org_Human	ncRNA sORF	Jurkat
3124291	48	CTG ...	LFF ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	hES
644055	48	GTG ...	VGP ...	Ribo-seq	GTG	strong	2	sORFs_org_Human	ncRNA sORF	HeLa, THP-1
1832777	36	TTG ...	LTT ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	HeLa
485477	162	ATG ...	MGC ...	Ribo-seq	ATG		2	sORFs_org_Human	ncRNA sORF	HEK293, HEK293T
485475	72	CTG ...	LHG ...	Ribo-seq	CTG		3	sORFs_org_Human	ncRNA sORF	HAP1, HEK293T, MM1S
412634	39	CTG ...	LRP ...	Ribo-seq	CTG	moderate	21	sORFs_org_Human	ncRNA sORF	BJ, Flp-In_T-REx-293, HAP1, HCT116, HEK293, HEK293T, HeLa, hES, Jurkat, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
485479	63	GTG ...	VLC ...	Ribo-seq	GTG		5	sORFs_org_Human	ncRNA sORF	HAP1, HEK293, HEK293T, MM1S, RPE-1
111052	63	ATG ...	MRN ...	Ribo-seq	ATG	moderate	25	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
705860	93	GAG ...	EEP ...	Ribo-seq	GAG		6	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HeLa, Jurkat, THP-1
485484	150	GTG ...	VFF ...	Ribo-seq	GTG		5	sORFs_org_Human	ncRNA sORF	HEK293, HEK293T, RPE-1, U2OS
485481	60	CTG ...	LCV ...	Ribo-seq	CTG		10	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, MM1S, RPE-1
705864	36	AAT ...	NVL ...	Ribo-seq	AAT		2	sORFs_org_Human	ncRNA sORF	HEK293, Jurkat

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