Transcript 1348 | MetamORF

Transcript

ID CARD

MetamORF ID

1348

ENST00000372919

Name

ANXA7-201

Strand

Biotype

protein_coding

Start-end positions

73375445-73414067

CDS Start-stop positions

73376095-73400856

CDS Relative positions

Sequences

Transcript sequence

CCC ...

Genome browsers

UCSC

Gene

HGNC:545

Aliases

ANX7,
ANXA7, ENSG00000138279, HGNC:545,
NCBI:310, OFF:ANXA7

Chr 10

ORFs

42 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
95441	147	TTG ...	LRF ...	Ribo-seq	TTG		27	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
95439	105	TTG ...	LSD ...	Ribo-seq	TTG		26	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
280865	57	TTG ...	LNV ...	Ribo-seq	TTG		19	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, Monocyte, RPE-1, U2OS
896265	33	GGA ...	GRC ...	Ribo-seq	GGA	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
95433	69	TTG ...	LKR ...	Ribo-seq	TTG		22	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1347	60	ATG ...	MTP ...	Ribo-seq	ATG		15	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
280876	84	TTG ...	LWM ...	Ribo-seq	TTG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, Monocyte, RPE-1
280878	96	ATG ...	MSR ...	Ribo-seq	ATG		14	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, Monocyte, RPE-1
97450	33	TTG ...	LNV ...	Ribo-seq	TTG		21	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
632829	294	GTG ...	VPH ...	Ribo-seq	GTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, HFF, RPE-1, THP-1
280882	135	TTG ...	LSL ...	Ribo-seq	TTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, LCL, RPE-1
3303022	1467	ATG ...	MSY ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
406120	54	AAC ...	NVY ...	Ribo-seq	AAC		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, Jurkat
1816455	72	ATG ...	MTC ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
901564	117	ATC ...	ISQ ...	Ribo-seq	ATC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
95431	57	GTG ...	VLA ...	Ribo-seq	GTG		23	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
901557	63	CAG ...	QMT ...	Ribo-seq	CAG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
99987	93	TTG ...	LKR ...	Ribo-seq	TTG		21	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
95435	81	TTG ...	LDE ...	Ribo-seq	TTG		22	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
95429	54	CTG ...	LAQ ...	Ribo-seq	CTG		23	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
901562	111	CAG ...	QNL ...	Ribo-seq	CAG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, Jurkat
280880	117	GTG ...	VWF ...	Ribo-seq	GTG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, Monocyte, RPE-1
480551	39	ATG ...	MLS ...	Ribo-seq	ATG	moderate	16	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, U2OS
1350	69	CTG ...	LAQ ...	Ribo-seq	CTG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
99991	129	TTG ...	LSD ...	Ribo-seq	TTG		23	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
1722130	111	ATG ...	MEV ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
97456	72	GTG ...	VHK ...	Ribo-seq	GTG	weak	26	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
280884	105	TTG ...	LGQ ...	Ribo-seq	TTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, Monocyte, RPE-1
95437	33	ATG ...	MLS ...	Ribo-seq	ATG	weak	24	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, Monocyte, RPE-1, THP-1, U2OS
1352	72	GTG ...	VLA ...	Ribo-seq	GTG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
404599	87	CAG ...	QNL ...	Ribo-seq	CAG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, HEK293, Jurkat
280874	78	ATG ...	MWW ...	Ribo-seq	ATG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, Monocyte, RPE-1
632831	297	CTG ...	LVP ...	Ribo-seq	CTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, HFF, RPE-1, THP-1
99993	171	TTG ...	LRF ...	Ribo-seq	TTG		24	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
275398	33	GTG ...	VCP ...	Ribo-seq	GTG	moderate	4	sORFs_org_Human	InCDS Overlapping sORF	LCL, MDA-MB-231, MM1S, RPE-1
1354	57	ATG ...	MPG ...	Ribo-seq	ATG		20	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
275396	36	CTG ...	LPS ...	Ribo-seq	CTG	moderate	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HeLa, LCL, MDA-MB-231, RPE-1
280872	57	ATG ...	MIR ...	Ribo-seq	ATG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, Monocyte, RPE-1
896268	45	CAT ...	HQD ...	Ribo-seq	CAT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
99989	105	TTG ...	LDE ...	Ribo-seq	TTG		21	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
901560	69	CAT ...	HQD ...	Ribo-seq	CAT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
404597	30	AAC ...	NVY ...	Ribo-seq	AAC		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, Jurkat

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