Transcript 13056 | MetamORF

Transcript

ID CARD

MetamORF ID

13056

ENST00000551858

Name

NAA25-207

Strand

Biotype

nonsense_mediated_decay

Start-end positions

112039270-112108779

CDS Start-stop positions

112097386-112108773

CDS Relative positions

Sequences

Transcript sequence

GTC ...

Genome browsers

UCSC

Gene

HGNC:25783

Aliases

C12orf30,
ENSG00000111300, FLJ13089, HGNC:25783,
NAA25, NCBI:80018, OFF:NAA25

Chr 12

ORFs

66 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
110357	78	CTG ...	LNN ...	Ribo-seq	CTG		7	sORFs_org_Human	Downstream NMD sORF	guo_2014, HEK293, HeLa, hES, MDA-MB-231
540676	168	TTG ...	LCV ...	Ribo-seq	TTG		1	sORFs_org_Human	Downstream NMD sORF	U2OS
2339759	42	GTG ...	VAG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative Downstream NMD sORF	MDA-MB-231
2057254	42	ATG ...	MTF ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293, MDA-MB-231
304019	78	ATG ...	MGR ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293, hES, LCL
540690	111	TTG ...	LTS ...	Ribo-seq	TTG		11	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, MDA-MB-231, RPE-1, U2OS
304027	48	CTG ...	LAV ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	Alternative Downstream NMD sORF	HeLa, LCL
1143154	75	TTG ...	LQF ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293
540692	39	TTG ...	LDV ...	Ribo-seq	TTG		4	sORFs_org_Human	Downstream NMD sORF	BJ, HEK293, hES, U2OS
540666	33	CTG ...	LGS ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293, HeLa, U2OS
304029	51	GTG ...	VRF ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative Downstream NMD sORF	LCL
540668	57	TTG ...	LRD ...	Ribo-seq	TTG		10	sORFs_org_Human	Downstream NMD sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, MDA-MB-231, U2OS
926366	45	GCT ...	AVH ...	Ribo-seq	GCT		1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
304033	63	ATG ...	MKT ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	Downstream NMD sORF	HEK293, LCL
1739060	102	TTG ...	LFE ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative Downstream NMD sORF	Blood, HEK293, HeLa, MDA-MB-231
13055	144	GTG ...	VKF ...	Ribo-seq	GTG		15	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, HFF, MDA-MB-231, U2OS
1831516	120	GTG ...	VVK ...	Ribo-seq	GTG	moderate	3	sORFs_org_Human	Downstream NMD sORF	HeLa, MDA-MB-231
1143156	87	TTG ...	LKT ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293, hES, MDA-MB-231
540674	162	GTG ...	VVQ ...	Ribo-seq	GTG		1	sORFs_org_Human	Downstream NMD sORF	U2OS
110361	231	TTG ...	LST ...	Ribo-seq	TTG		3	sORFs_org_Human	Downstream NMD sORF	HEK293, hES, U2OS
304023	48	CTG ...	LLT ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	Alternative Downstream NMD sORF	LCL, MDA-MB-231
2339745	57	CTG ...	LYL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream NMD sORF	MDA-MB-231
1739057	72	TTG ...	LNQ ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative Downstream NMD sORF	Blood, HEK293, HeLa, MDA-MB-231
412180	105	CCA ...	PEF ...	Ribo-seq	CCA		1	sORFs_org_Human	Downstream NMD sORF	HCT116
2554861	39	TTG ...	LAC ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293
304021	45	CTG ...	LTS ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	Alternative Downstream NMD sORF	LCL, MDA-MB-231
1143152	135	TTG ...	LTR ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293
2339741	39	TTG ...	LSM ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative Downstream NMD sORF	MDA-MB-231
1143158	36	TTG ...	LTS ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative Downstream NMD sORF	Blood, HEK293, MDA-MB-231
2554857	30	CTG ...	LSP ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293
3331270	114	ATG ...	MAT ...	Predicted	ATG		1	Mackowiak2015	CDS NMD sORF
2339743	39	GTG ...	VDS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative Downstream NMD sORF	MDA-MB-231
1831519	33	TTG ...	LHK ...	Ribo-seq	TTG	moderate	3	sORFs_org_Human	Alternative Downstream NMD sORF	HeLa, MDA-MB-231
110365	69	TTG ...	LEL ...	Ribo-seq	TTG		8	sORFs_org_Human	Alternative Downstream NMD sORF	Blood, guo_2014, HEK293, HeLa, hES, U2OS
926368	171	CAT ...	HLC ...	Ribo-seq	CAT		1	sORFs_org_Human	Downstream NMD sORF	Jurkat
2339747	63	TTG ...	LVL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative Downstream NMD sORF	MDA-MB-231
2339767	90	TTG ...	LFL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative Downstream NMD sORF	MDA-MB-231
110363	63	CTG ...	LIR ...	Ribo-seq	CTG		9	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, U2OS
1739062	123	ATG ...	MLS ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative Downstream NMD sORF	Blood, HEK293, HeLa, MDA-MB-231
110355	33	CTG ...	LLD ...	Ribo-seq	CTG		6	sORFs_org_Human	Downstream NMD sORF	guo_2014, HEK293, HeLa, hES, Jurkat
304031	30	TTG ...	LLR ...	Ribo-seq	TTG	weak	2	sORFs_org_Human	Downstream NMD sORF	HeLa, LCL
926364	99	TTC ...	FES ...	Ribo-seq	TTC		1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
926372	36	GAG ...	EAW ...	Ribo-seq	GAG		1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
926374	63	TTC ...	FDS ...	Ribo-seq	TTC		1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
2339761	30	GTG ...	VMR ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative Downstream NMD sORF	MDA-MB-231
540672	159	GTG ...	VQL ...	Ribo-seq	GTG		1	sORFs_org_Human	Downstream NMD sORF	U2OS
412182	120	GAA ...	ESL ...	Ribo-seq	GAA		2	sORFs_org_Human	Alternative Downstream NMD sORF	HCT116, Jurkat
540670	153	CTG ...	LTR ...	Ribo-seq	CTG		1	sORFs_org_Human	Downstream NMD sORF	U2OS
540678	180	CTG ...	LQQ ...	Ribo-seq	CTG		2	sORFs_org_Human	Downstream NMD sORF	hES, U2OS
540688	57	CTG ...	LSR ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative Downstream NMD sORF	guo_2014, HEK293, HeLa, hES, U2OS
926357	42	GAA ...	ERM ...	Ribo-seq	GAA		1	sORFs_org_Human	Downstream NMD sORF	Jurkat
110359	207	CTG ...	LAL ...	Ribo-seq	CTG		3	sORFs_org_Human	Downstream NMD sORF	HEK293, hES, U2OS
926370	225	ACA ...	TPT ...	Ribo-seq	ACA		1	sORFs_org_Human	Downstream NMD sORF	Jurkat
1143146	90	TTG ...	LKT ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293
3123595	57	CTG ...	LLS ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Downstream NMD sORF	hES
13060	72	CTG ...	LTY ...	Ribo-seq	CTG		14	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
13058	45	CTG ...	LIE ...	Ribo-seq	CTG		13	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
926362	78	GTG ...	VHL ...	Ribo-seq	GTG		5	sORFs_org_Human	Alternative Downstream NMD sORF	Blood, HEK293, HeLa, Jurkat, MDA-MB-231
540694	60	TTG ...	LGK ...	Ribo-seq	TTG		5	sORFs_org_Human	Downstream NMD sORF	BJ, HEK293, hES, U2OS
926359	96	GCG ...	ASQ ...	Ribo-seq	GCG		1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
540680	201	CTG ...	LPA ...	Ribo-seq	CTG		2	sORFs_org_Human	Downstream NMD sORF	hES, U2OS
1143160	39	TTG ...	LLT ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative Downstream NMD sORF	Blood, HEK293, MDA-MB-231
540696	69	CTG ...	LER ...	Ribo-seq	CTG		8	sORFs_org_Human	Downstream NMD sORF	BJ, HEK293, HeLa, hES, MDA-MB-231, U2OS
2339769	96	TTG ...	LEL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative Downstream NMD sORF	MDA-MB-231
2554851	39	ATG ...	MLS ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293, HeLa
2339739	33	ATG ...	MIF ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	Alternative Downstream NMD sORF	MDA-MB-231

Export data