Transcript 1299291

Transcript

ID CARD

MetamORF ID

1299291

ENST00000398637

Name

SLC38A1-201

Strand

Biotype

protein_coding

Start-end positions

46183063-46269012

CDS Start-stop positions

46188970-46239800

CDS Relative positions

Sequences

Transcript sequence

GCA ...

Genome browsers

UCSC

Gene

HGNC:13447

Aliases

ATA1,
ENSG00000111371, HGNC:13447, NAT2,
NCBI:81539, OFF:SLC38A1, SAT1,
SLC38A1

Chr 12

ORFs

40 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1828026	54	GTG ...	VKK ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1827960	123	TTG ...	LNC ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Downstream sORF	HeLa
1828016	135	CTG ...	LCC ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1828024	228	CTG ...	LTE ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1827964	150	CTG ...	LGR ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	Downstream sORF	HeLa
1828004	102	ATG ...	MQE ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1827978	30	CTG ...	LPA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1300354	117	TTG ...	LPP ...	Ribo-seq	TTG		2	sORFs_org_Human	sORF Upstream	HEK293T, HeLa
1827990	54	ATG ...	MVV ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1827988	117	GTG ...	VFV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
1827976	30	GTG ...	VSE ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1828022	216	CTG ...	LST ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1827966	42	TTG ...	LIC ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1827972	33	CTG ...	LYI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
1827982	51	GTG ...	VLR ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1827996	57	TTG ...	LVG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
1827968	45	TTG ...	LLI ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1828006	108	CTG ...	LSM ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1827958	57	CTG ...	LHF ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1828020	162	ATG ...	MRK ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1827984	75	TTG ...	LWW ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1828000	63	CTG ...	LVK ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	Downstream sORF	HeLa
1827956	99	TTG ...	LGS ...	Ribo-seq	TTG	strong	1	sORFs_org_Human	Downstream sORF	HeLa
1827970	51	TTG ...	LKL ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1827992	39	GTG ...	VPV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1828014	165	GTG ...	VLS ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1827994	33	GTG ...	VNS ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Downstream sORF	HeLa
1827974	48	CTG ...	LSS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1827954	90	ATG ...	MKA ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	Downstream sORF	HeLa
1828018	171	GTG ...	VSV ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1828008	78	GTG ...	VPL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
1299290	36	TTG ...	LPP ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative sORF Upstream	HEK293T
1828002	36	CTG ...	LKR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1827998	33	CTG ...	LST ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Downstream sORF	HeLa
1827980	51	GTG ...	VQI ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1827962	138	ATG ...	MFF ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
1827986	60	TTG ...	LPV ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1828010	132	CTG ...	LCH ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1827952	69	CTG ...	LNI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
1828012	162	CTG ...	LSP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa

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