Transcript 12648 | MetamORF

Transcript

ID CARD

MetamORF ID

12648

ENST00000552221

Name

SART3-215

Strand

Biotype

processed_transcript

Start-end positions

108545289-108561168

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATT ...

Genome browsers

UCSC

Gene

HGNC:16860

Aliases

ENSG00000075856,
HGNC:16860, KIAA0156, NCBI:9733,
OFF:SART3, p110, RP11-13G14,
SART3, TIP110

Chr 12

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
925531	87	CTA ...	LQL ...	Ribo-seq	CTA		1	sORFs_org_Human	ncRNA sORF	Jurkat
3123177	159	CTG ...	LEW ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	hES
303486	156	TTG ...	LSI ...	Ribo-seq	TTG		11	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, LCL, MM1S, RPE-1, THP-1
643185	123	GTG ...	VDL ...	Ribo-seq	GTG		9	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, MM1S, THP-1
643181	108	CTG ...	LLR ...	Ribo-seq	CTG		9	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, MM1S, THP-1
3123175	150	CTG ...	LHD ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	hES
303484	81	CTG ...	LPC ...	Ribo-seq	CTG		9	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
643183	117	TTG ...	LIR ...	Ribo-seq	TTG		9	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, MM1S, THP-1
706445	282	GAT ...	DEY ...	Ribo-seq	GAT		1	sORFs_org_Human	ncRNA sORF	Jurkat
706443	267	GCT ...	ASS ...	Ribo-seq	GCT		1	sORFs_org_Human	ncRNA sORF	Jurkat
12647	36	TTG ...	LSR ...	Ribo-seq	TTG		2	sORFs_org_Human	ncRNA sORF	HEK293, LCL
643179	99	CTG ...	LEG ...	Ribo-seq	CTG		6	sORFs_org_Human	ncRNA sORF	Blood, HEK293, hES, MM1S, THP-1
925529	57	GCT ...	AQA ...	Ribo-seq	GCT		1	sORFs_org_Human	ncRNA sORF	Jurkat
13801	300	GTG ...	VSE ...	Ribo-seq	GTG		9	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, HFF, RPE-1
412018	156	GAG ...	EWL ...	Ribo-seq	GAG		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
2965448	78	GTG ...	VRM ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	hES

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