Metam
ORF

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Transcript

Transcript

ID CARD

MetamORF ID

1264

ID

ENST00000625364

Name

PPA1-206

Strand

-

Biotype

protein_coding

Start-end positions

70210394-70233434

CDS Start-stop positions

70210394-70233327

CDS Relative positions

-

Sequences

Transcript sequence

CCG ...

Gene

ID

HGNC:9226

Aliases

ENSG00000180817,
HGNC:9226, IOPPP, NCBI:5464,
OFF:PPA1, PP, PP1,
PPA1, Ppase, SID6-8061


Chr 10

ORFs

20 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1263 57

TTG ...

LKY ...

Ribo-seq
TTG 15 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, Flp-In_T-REx-293, HAP1,
HEK293, HEK293T, HeLa,
hES, Monocyte, RPE-1
895828 51

CGA ...

RGA ...

Ribo-seq
CGA 2 sORFs_org_Human
    InCDS
    Overlapping
    sORF
HEK293, Jurkat
404484 39

AAT ...

NWR ...

Ribo-seq
AAT moderate 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HCT116
275042 117

GTG ...

VRA ...

Ribo-seq
GTG 25 sORFs_org_Human
    Overlapping
    sORF
    Upstream
BJ, Blood, Flp-In_T-REx-293,
guo_2014, HAP1, HEK293,
HEK293T, HeLa, LCL,
loayza_puch_2016, MDA-MB-231, MM1S,
RPE-1, THP-1, U2OS
95268 39

TTG ...

LKY ...

Ribo-seq
TTG 21 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, Brain, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, RPE-1,
U2OS
1301410 36

TGT ...

CGS ...

Ribo-seq
TGT moderate 1 sORFs_org_Human
    Alternative
    Overlapping
    sORF
    Upstream
BJ
95270 30

ATG ...

MIF ...

Ribo-seq
ATG 28 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Brain,
Flp-In_T-REx-293, HAP1, HEK293,
HEK293T, HeLa, hES,
LCL, MDA-MB-231, MM1S,
Monocyte, RPE-1, U2OS
275040 99

GTG ...

VAA ...

Ribo-seq
GTG 24 sORFs_org_Human
    Overlapping
    sORF
    Upstream
BJ, Blood, Flp-In_T-REx-293,
guo_2014, HAP1, HEK293,
HEK293T, HeLa, LCL,
loayza_puch_2016, MDA-MB-231, MM1S,
RPE-1, THP-1, U2OS
895826 36

AAG ...

KYH ...

Ribo-seq
AAG 3 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HeLa, Jurkat, THP-1
1270 84

TTG ...

LQK ...

Ribo-seq
TTG 17 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Flp-In_T-REx-293, HAP1, HEK293,
HEK293T, HeLa, hES,
LCL, RPE-1
404486 57

CAG ...

QHR ...

Ribo-seq
CAG 5 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Breast, HCT116,
HEK293, Jurkat
404488 105

GGC ...

GSV ...

Ribo-seq
GGC 1 sORFs_org_Human
    Overlapping
    sORF
    Upstream
HCT116
275044 84

GTG ...

VGL ...

Ribo-seq
GTG strong 17 sORFs_org_Human
    Alternative
    Overlapping
    sORF
    Upstream
BJ, Blood, HEK293,
HEK293T, HeLa, LCL,
loayza_puch_2016, MDA-MB-231, MM1S,
RPE-1, U2OS
1128735 78

ATG ...

MWM ...

Ribo-seq
ATG 2 sORFs_org_Human
    InCDS
    Overlapping
    sORF
HEK293, HEK293T
1128738 117

TTG ...

LTK ...

Ribo-seq
TTG 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
HEK293
1266 45

ATG ...

MIF ...

Ribo-seq
ATG 27 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, Brain, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, MDA-MB-231, Monocyte,
RPE-1, THP-1, U2OS
95266 87

TTG ...

LPL ...

Ribo-seq
TTG 6 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Flp-In_T-REx-293, HEK293, HEK293T
1268 75

ATG ...

MRK ...

Ribo-seq
ATG 16 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, Flp-In_T-REx-293, HAP1,
HEK293, HeLa, hES,
LCL, MDA-MB-231, Monocyte
895831 159

AGT ...

SAQ ...

Ribo-seq
AGT 1 sORFs_org_Human
    Overlapping
    sORF
    Upstream
Jurkat
95272 60

ATG ...

MRK ...

Ribo-seq
ATG 15 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Flp-In_T-REx-293, HAP1, HEK293,
HeLa, hES, LCL,
Monocyte

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

B_cell

BJ

Blood

Brain

Brain_tumor

Breast

Flp-In_T-REx-293

guo_2014

HAP1

HCT116

HEK293

HEK293T

HeLa

hES

HFF

Jurkat

LCL

loayza_puch_2016

MDA-MB-231

MM1S

Monocyte

NCCIT

RPE-1

Skeletal_muscle

THP-1

U2OS