Transcript 1241 | MetamORF

Transcript

ID CARD

MetamORF ID

1241

ENST00000431664

Name

SAR1A-206

Strand

Biotype

protein_coding

Start-end positions

70150223-70161915

CDS Start-stop positions

70152476-70161915

CDS Relative positions

Sequences

Transcript sequence

ATG ...

Genome browsers

UCSC

Gene

HGNC:10534

Aliases

ENSG00000079332,
HGNC:10534, NCBI:56681, OFF:SAR1A,
SAR1, SAR1A, Sara,
SARA1

Chr 10

ORFs

60 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
97302	57	GTG ...	VKK ...	Ribo-seq	GTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, LCL
275028	159	ATG ...	MLA ...	Ribo-seq	ATG	weak	3	sORFs_org_Human	Alternative Downstream Overlapping sORF	hES, HFF, LCL
901444	102	TTA ...	LSW ...	Ribo-seq	TTA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
895791	39	AGA ...	RAN ...	Ribo-seq	AGA	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1816285	78	TTG ...	LGG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1816281	114	GTG ...	VLV ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Downstream sORF	HeLa
895797	126	ATG ...	MQA ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1816289	75	TTG ...	LTD ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative Downstream Overlapping sORF	HeLa
895771	48	GAG ...	EAR ...	Ribo-seq	GAG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
99918	69	TTG ...	LSF ...	Ribo-seq	TTG		24	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
99907	84	TTG ...	LTE ...	Ribo-seq	TTG		21	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, RPE-1, U2OS
97308	123	ATG ...	MKQ ...	Ribo-seq	ATG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, hES, HFF, LCL, RPE-1, U2OS
1816295	30	ATG ...	MAS ...	Ribo-seq	ATG	strong	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, Monocyte
99903	63	GTG ...	VKK ...	Ribo-seq	GTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, hES, LCL
97304	66	ATG ...	MQS ...	Ribo-seq	ATG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, hES, LCL
1816287	81	CTG ...	LLG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
3069151	45	GTG ...	VDL ...	Ribo-seq	GTG		1	sORFs_org_Human	InCDS Overlapping sORF	MM1S
1245	90	ATG ...	MQA ...	Ribo-seq	ATG		20	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MM1S, RPE-1, U2OS
1816283	126	ATG ...	MLP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
1816267	75	GTG ...	VKL ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Downstream sORF	HeLa
99905	72	ATG ...	MQS ...	Ribo-seq	ATG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, hES, HFF, LCL, U2OS
95261	39	CTG ...	LCR ...	Ribo-seq	CTG	moderate	28	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
97310	126	CTG ...	LMK ...	Ribo-seq	CTG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, hES, HFF, LCL, RPE-1, U2OS
895773	75	GGA ...	GSV ...	Ribo-seq	GGA	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
895795	36	AGG ...	RQN ...	Ribo-seq	AGG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1816273	36	ATG ...	MNR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
895789	33	AAC ...	NNC ...	Ribo-seq	AAC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1092603	108	ATG ...	MCQ ...	Ribo-seq	ATG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, hES, HFF
895769	33	CGA ...	RGF ...	Ribo-seq	CGA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1816275	93	CTG ...	LGL ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	Downstream sORF	HeLa
404473	57	GAT ...	DCL ...	Ribo-seq	GAT	weak	2	sORFs_org_Human	InCDS Overlapping sORF	HCT116, Jurkat
895777	96	TTA ...	LSW ...	Ribo-seq	TTA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
901452	147	CCT ...	PLQ ...	Ribo-seq	CCT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
895787	147	CCT ...	PLQ ...	Ribo-seq	CCT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1816271	36	CTG ...	LSS ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1816279	111	CTG ...	LVQ ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	Downstream sORF	HeLa
1046201	129	GTG ...	VCS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative Downstream Overlapping sORF	guo_2014
1816277	108	GTG ...	VQV ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Downstream sORF	HeLa
406087	60	TGG ...	WWT ...	Ribo-seq	TGG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
280725	135	TTG ...	LIL ...	Ribo-seq	TTG		23	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
404471	165	TGG ...	WWT ...	Ribo-seq	TGG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
95259	63	GTG ...	VQC ...	Ribo-seq	GTG	weak	24	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
901450	114	AAG ...	KHV ...	Ribo-seq	AAG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
895781	168	TTC ...	FWW ...	Ribo-seq	TTC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
280721	126	GTG ...	VGT ...	Ribo-seq	GTG		22	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
901447	63	TTC ...	FWW ...	Ribo-seq	TTC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
895784	180	ATG ...	MGL ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1243	54	ATG ...	MTD ...	Ribo-seq	ATG		29	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
99913	132	CTG ...	LMK ...	Ribo-seq	CTG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, HEK293, HeLa, hES, HFF, LCL, RPE-1, U2OS
99915	51	GTG ...	VQI ...	Ribo-seq	GTG		22	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1240	36	ATG ...	MFQ ...	Ribo-seq	ATG		27	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, U2OS
99920	75	ATG ...	MGL ...	Ribo-seq	ATG		25	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
99911	129	ATG ...	MKQ ...	Ribo-seq	ATG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HAP1, HEK293, HeLa, hES, HFF, LCL, RPE-1, U2OS
97306	78	TTG ...	LTE ...	Ribo-seq	TTG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, guo_2014, HEK293, HeLa, hES, HFF, LCL, RPE-1, U2OS
99909	114	ATG ...	MCQ ...	Ribo-seq	ATG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	guo_2014, HEK293, hES, HFF, LCL, U2OS
1816269	84	GTG ...	VPH ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Downstream sORF	HeLa
2902535	45	TTG ...	LSG ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa
895793	93	AAG ...	KMT ...	Ribo-seq	AAG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
280723	129	TTG ...	LVG ...	Ribo-seq	TTG		23	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
895779	30	ATC ...	IQC ...	Ribo-seq	ATC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat

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