Transcript 12349 | MetamORF

Transcript

ID CARD

MetamORF ID

12349

ENST00000548852

Name

LTA4H-207

Strand

Biotype

nonsense_mediated_decay

Start-end positions

96002990-96035641

CDS Start-stop positions

96024499-96035519

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

HGNC:6710

Aliases

ENSG00000111144,
HGNC:6710, LTA4H, NCBI:4048,
OFF:LTA4H

Chr 12

ORFs

73 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
2056969	66	ATG ...	MLL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	InCDS NMD Overlapping sORF	HEK293, MDA-MB-231
540098	36	GTG ...	VLC ...	Ribo-seq	GTG	moderate	5	sORFs_org_Human	Alternative NMD Overlapping sORF Upstream	BJ, HeLa, MDA-MB-231, RPE-1, U2OS
924695	102	CCA ...	PKS ...	Ribo-seq	CCA		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
12411	186	TTG ...	LDT ...	Ribo-seq	TTG		15	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HAP1, HEK293, HeLa, hES, HFF, Jurkat, RPE-1
1299806	42	CTG ...	LVA ...	Ribo-seq	CTG	strong	2	sORFs_org_Human	Alternative NMD sORF Upstream	HEK293T, RPE-1
411837	66	CAT ...	HEI ...	Ribo-seq	CAT		2	sORFs_org_Human	Alternative Downstream NMD sORF	HCT116, Jurkat
12417	192	TTG ...	LAS ...	Ribo-seq	TTG		11	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HAP1, HEK293, HeLa, hES
924708	210	ATA ...	IVD ...	Ribo-seq	ATA		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
1142558	117	CTG ...	LTG ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HEK293
12397	99	CTG ...	LVA ...	Ribo-seq	CTG		18	sORFs_org_Human	Downstream NMD sORF	BJ, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
1051479	66	GTG ...	VME ...	Ribo-seq	GTG		7	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293, hES, MDA-MB-231
12407	96	TTG ...	LRP ...	Ribo-seq	TTG		12	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
485126	45	GTG ...	VKL ...	Ribo-seq	GTG		4	sORFs_org_Human	Alternative Downstream NMD Overlapping sORF	HEK293, HEK293T, HeLa, hES
2337626	33	GTG ...	VAW ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	Alternative Downstream NMD sORF	MDA-MB-231
411832	123	GGA ...	GHT ...	Ribo-seq	GGA		1	sORFs_org_Human	Downstream NMD sORF	HCT116
109449	108	CTG ...	LQS ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative Downstream NMD Overlapping sORF	HEK293, hES
12413	150	CTG ...	LRC ...	Ribo-seq	CTG		8	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HEK293, HeLa, hES
411835	57	TCT ...	SHS ...	Ribo-seq	TCT		1	sORFs_org_Human	Alternative Downstream NMD sORF	HCT116
2337631	84	ATG ...	MYG ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	Alternative Downstream NMD sORF	MDA-MB-231
302793	63	TTG ...	LVK ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, HEK293, LCL, MDA-MB-231
2056971	84	ATG ...	MDK ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	InCDS NMD Overlapping sORF	HEK293, MDA-MB-231
302803	123	ATG ...	MNF ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative Downstream NMD sORF	LCL
411830	78	GGT ...	GEK ...	Ribo-seq	GGT		1	sORFs_org_Human	Downstream NMD sORF	HCT116
924684	60	CCT ...	PDP ...	Ribo-seq	CCT		1	sORFs_org_Human	Downstream NMD sORF	Jurkat
12409	153	GTG ...	VIN ...	Ribo-seq	GTG		12	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HAP1, HEK293, HeLa, hES, HFF
1096562	51	CTG ...	LTQ ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293, hES, MDA-MB-231
1096567	75	GTG ...	VLF ...	Ribo-seq	GTG		4	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293, hES, MDA-MB-231
1830732	39	TTG ...	LHM ...	Ribo-seq	TTG	weak	4	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293, HeLa, MDA-MB-231
411847	39	GTA ...	VAE ...	Ribo-seq	GTA	moderate	2	sORFs_org_Human	Alternative NMD sORF Upstream	HCT116, Jurkat
12391	201	CTG ...	LGG ...	Ribo-seq	CTG		4	sORFs_org_Human	Downstream NMD sORF	HEK293
109456	177	ATG ...	MKL ...	Ribo-seq	ATG		8	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HAP1, HEK293, HeLa, hES, LCL
924686	75	CGT ...	RDG ...	Ribo-seq	CGT		1	sORFs_org_Human	Downstream NMD sORF	Jurkat
411839	144	GGA ...	GQE ...	Ribo-seq	GGA		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HCT116
12395	96	GTG ...	VAL ...	Ribo-seq	GTG		18	sORFs_org_Human	Downstream NMD sORF	BJ, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
1737922	33	ATG ...	MKY ...	Ribo-seq	ATG	weak	5	sORFs_org_Human	Alternative Downstream NMD sORF	Blood, HEK293, HeLa, MDA-MB-231
12405	75	CTG ...	LLS ...	Ribo-seq	CTG		16	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HAP1, HEK293, HEK293T, HeLa, hES, Jurkat, LCL, MDA-MB-231, RPE-1
924703	198	TGT ...	CSL ...	Ribo-seq	TGT		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
924690	72	ATC ...	ILP ...	Ribo-seq	ATC		1	sORFs_org_Human	Alternative Downstream NMD Overlapping sORF	Jurkat
12415	156	CTG ...	LHL ...	Ribo-seq	CTG		9	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HAP1, HEK293, HeLa, hES
12403	54	CTG ...	LNR ...	Ribo-seq	CTG		16	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1
411845	33	CTG ...	LCD ...	Ribo-seq	CTG	moderate	6	sORFs_org_Human	Alternative NMD Overlapping sORF Upstream	HCT116, HEK293T, MDA-MB-231, MM1S, RPE-1, U2OS
2337641	30	CTG ...	LSL ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream NMD sORF	MDA-MB-231
302791	60	GTG ...	VKS ...	Ribo-seq	GTG		4	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, HEK293, LCL, MDA-MB-231
2056967	60	TTG ...	LEK ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	InCDS NMD Overlapping sORF	HEK293, MDA-MB-231
302789	39	ATG ...	MLW ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, HEK293, LCL
924692	63	GGC ...	GSL ...	Ribo-seq	GGC		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
411843	204	GAT ...	DTC ...	Ribo-seq	GAT		2	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HCT116, Jurkat
1012002	51	CTG ...	LGG ...	Ribo-seq	CTG		1	sORFs_org_Human	Downstream NMD sORF	guo_2014
1096556	36	ATG ...	MVA ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293, MDA-MB-231
411841	96	ACG ...	TVQ ...	Ribo-seq	ACG		2	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HCT116, Jurkat
1096573	42	TTG ...	LIR ...	Ribo-seq	TTG		6	sORFs_org_Human	Alternative Downstream NMD sORF	HAP1, HEK293, HeLa, hES
12385	99	CTG ...	LCT ...	Ribo-seq	CTG		12	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
302801	39	TTG ...	LQA ...	Ribo-seq	TTG		7	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293, HeLa, LCL, MDA-MB-231, RPE-1
302799	81	TTG ...	LAQ ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293, LCL
3201984	54	GGC ...	GCG ...	Ribo-seq	GGC	moderate	1	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293
924677	51	AGC ...	SWT ...	Ribo-seq	AGC		1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
12389	33	GTG ...	VTN ...	Ribo-seq	GTG		17	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
12383	114	GTG ...	VYL ...	Ribo-seq	GTG		25	sORFs_org_Human	Downstream NMD sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
12399	117	GTG ...	VSV ...	Ribo-seq	GTG		20	sORFs_org_Human	Downstream NMD sORF	BJ, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
12351	57	CTG ...	LHS ...	Ribo-seq	CTG	moderate	15	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, MM1S, RPE-1, U2OS
924699	129	TAC ...	YKG ...	Ribo-seq	TAC		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
12387	111	ATG ...	MRD ...	Ribo-seq	ATG		17	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, Flp-In_T-REx-293, HAP1, HCT116, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
924680	33	GCT ...	ALV ...	Ribo-seq	GCT		1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
12393	39	CTG ...	LIA ...	Ribo-seq	CTG		21	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, Blood, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
12419	207	GTG ...	VDT ...	Ribo-seq	GTG		12	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HAP1, HEK293, HeLa, hES
12401	42	CTG ...	LGR ...	Ribo-seq	CTG		9	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1
12348	42	GTG ...	VGG ...	Ribo-seq	GTG	moderate	13	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, U2OS
2337629	69	ATG ...	MTY ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Alternative Downstream NMD sORF	MDA-MB-231
12381	108	TTG ...	LER ...	Ribo-seq	TTG		23	sORFs_org_Human	Downstream NMD sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, U2OS
924688	93	TCC ...	SLS ...	Ribo-seq	TCC		1	sORFs_org_Human	Alternative Downstream NMD Overlapping sORF	Jurkat
12379	84	TTG ...	LFG ...	Ribo-seq	TTG		16	sORFs_org_Human	Downstream NMD sORF	BJ, guo_2014, HEK293, HeLa, hES, HFF, MM1S, RPE-1, U2OS
411828	57	AAT ...	NAL ...	Ribo-seq	AAT		1	sORFs_org_Human	Downstream NMD sORF	HCT116
1096564	63	ATG ...	MEK ...	Ribo-seq	ATG		5	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293, hES, MDA-MB-231

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