Transcript 1229 | MetamORF

Transcript

ID CARD

MetamORF ID

1229

ENST00000263559

Name

VPS26A-201

Strand

Biotype

protein_coding

Start-end positions

69124152-69172856

CDS Start-stop positions

69124278-69171269

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

HGNC:12711

Aliases

ENSG00000122958,
Hbeta58, HGNC:12711, NCBI:9559,
OFF:VPS26A, PEP8A, VPS26,
VPS26A

Chr 10

ORFs

33 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1202042	81	TTG ...	LFT ...	Ribo-seq	TTG	weak	6	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, RPE-1
97224	33	ATG ...	MMG ...	Ribo-seq	ATG	weak	25	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
1816209	42	TTG ...	LKH ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
895660	30	AAA ...	KQK ...	Ribo-seq	AAA	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
901414	69	GAT ...	DQK ...	Ribo-seq	GAT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
97234	69	TTG ...	LPP ...	Ribo-seq	TTG	moderate	8	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, LCL, RPE-1
97218	66	TTG ...	LVQ ...	Ribo-seq	TTG	moderate	26	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, Jurkat, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
1231	42	TTG ...	LMR ...	Ribo-seq	TTG		21	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
97232	45	TTG ...	LKS ...	Ribo-seq	TTG	moderate	15	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
97228	66	ATG ...	MIL ...	Ribo-seq	ATG	moderate	15	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
1228	30	ATG ...	MTE ...	Ribo-seq	ATG		17	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Brain_tumor, HAP1, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, MDA-MB-231, RPE-1, THP-1
901412	144	TTT ...	FKG ...	Ribo-seq	TTT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
895652	42	CTA ...	LLR ...	Ribo-seq	CTA	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
1202040	90	ATG ...	MIL ...	Ribo-seq	ATG	moderate	7	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Blood, Brain_tumor, HAP1, HEK293, HeLa, HFF, RPE-1
274919	57	CTG ...	LML ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HeLa, LCL
895649	36	AGA ...	RIR ...	Ribo-seq	AGA		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
895656	30	GAT ...	DQK ...	Ribo-seq	GAT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
895654	105	TTT ...	FKG ...	Ribo-seq	TTT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
97226	30	ATG ...	MTR ...	Ribo-seq	ATG	weak	21	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
274921	54	ATG ...	MLT ...	Ribo-seq	ATG	weak	3	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HeLa, LCL
404448	45	ACG ...	TER ...	Ribo-seq	ACG	strong	1	sORFs_org_Human	Alternative sORF Upstream	HCT116
274915	30	ATG ...	MGK ...	Ribo-seq	ATG	strong	24	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, Jurkat, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
97216	78	TTG ...	LEA ...	Ribo-seq	TTG	moderate	22	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
480447	30	ATG ...	MTE ...	Ribo-seq	ATG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, MDA-MB-231, RPE-1
895658	36	TAC ...	YHN ...	Ribo-seq	TAC	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, Jurkat
1498874	48	GTG ...	VTE ...	Ribo-seq	GTG	weak	2	sORFs_org_Human	Alternative sORF Upstream	BJ, RPE-1
1203845	30	TTG ...	LNI ...	Ribo-seq	TTG		7	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, hES, MDA-MB-231, RPE-1
97220	54	GTG ...	VRS ...	Ribo-seq	GTG	weak	25	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
95224	33	ATG ...	MNL ...	Ribo-seq	ATG	weak	13	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
97222	42	TTG ...	LFL ...	Ribo-seq	TTG	moderate	26	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
280664	45	TTG ...	LLM ...	Ribo-seq	TTG		19	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
1233	39	ATG ...	MRK ...	Ribo-seq	ATG		22	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	BJ, Blood, Brain, Brain_tumor, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
97230	60	TTG ...	LNL ...	Ribo-seq	TTG	moderate	14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1

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