Transcript 11842 | MetamORF

Transcript

ID CARD

MetamORF ID

11842

ENST00000550438

Name

OS9-214

Strand

Biotype

retained_intron

Start-end positions

57715706-57718168

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTA ...

Genome browsers

UCSC

Gene

HGNC:16994

Aliases

ENSG00000135506,
ERLEC2, HGNC:16994, NCBI:10956,
OFF:OS9, OS-9, OS9

Chr 12

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
2633913	48	CTG ...	LRS ...	Ribo-seq	CTG		2	sORFs_org_Human	Intronic sORF	HeLa, Monocyte
642063	66	GTG ...	VQV ...	Ribo-seq	GTG	moderate	5	sORFs_org_Human	Intronic sORF	Blood, HeLa, MDA-MB-231, RPE-1, THP-1
11846	144	GTG ...	VLT ...	Ribo-seq	GTG		22	sORFs_org_Human	Intronic sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
923222	39	GAG ...	EYM ...	Ribo-seq	GAG		1	sORFs_org_Human	Intronic sORF	Jurkat
642075	90	GTG ...	VLH ...	Ribo-seq	GTG		4	sORFs_org_Human	Intronic sORF	HEK293, HeLa, MDA-MB-231, THP-1
411454	198	GGT ...	GIS ...	Ribo-seq	GGT		4	sORFs_org_Human	Intronic sORF	HCT116, HeLa, Jurkat, THP-1
539292	87	CTG ...	LHR ...	Ribo-seq	CTG		6	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, MDA-MB-231, THP-1, U2OS
923215	213	TGT ...	CDE ...	Ribo-seq	TGT		1	sORFs_org_Human	Intronic sORF	Jurkat
642061	75	GTG ...	VTR ...	Ribo-seq	GTG	weak	4	sORFs_org_Human	Intronic sORF	Blood, HeLa, MDA-MB-231, THP-1
11841	171	GTG ...	VDE ...	Ribo-seq	GTG		23	sORFs_org_Human	Intronic sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
642069	114	CTG ...	LLL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Intronic sORF	THP-1
923218	180	ATC ...	IDR ...	Ribo-seq	ATC		1	sORFs_org_Human	Intronic sORF	Jurkat
11844	159	TTG ...	LSC ...	Ribo-seq	TTG		23	sORFs_org_Human	Intronic sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
923220	138	ACC ...	TIR ...	Ribo-seq	ACC		1	sORFs_org_Human	Intronic sORF	Jurkat
642065	54	CTG ...	LGT ...	Ribo-seq	CTG	moderate	5	sORFs_org_Human	Intronic sORF	Blood, HeLa, MDA-MB-231, RPE-1, THP-1
642073	78	CTG ...	LPP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Intronic sORF	THP-1
11848	141	CTG ...	LTI ...	Ribo-seq	CTG		22	sORFs_org_Human	Intronic sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS

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