Transcript 1174 | MetamORF

Transcript

ID CARD

MetamORF ID

1174

ENST00000614696

Name

CDK1-209

Strand

Biotype

protein_coding

Start-end positions

60778496-60794843

CDS Start-stop positions

60780166-60792147

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

HGNC:1722

Aliases

CDC2,
CDC28A, CDK1, ENSG00000170312,
HGNC:1722, NCBI:983, OFF:CDK1

Chr 10

ORFs

75 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
404360	126	TCC ...	SHV ...	Ribo-seq	TCC		1	sORFs_org_Human	Alternative Downstream sORF	HCT116
895232	60	ACT ...	TLV ...	Ribo-seq	ACT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1203	114	TTG ...	LDL ...	Ribo-seq	TTG		32	sORFs_org_Human	Alternative Downstream sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HCT116, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
895251	33	TGG ...	WQN ...	Ribo-seq	TGG	weak	2	sORFs_org_Human	Downstream sORF	HEK293, Jurkat
95010	51	CTG ...	LNH ...	Ribo-seq	CTG	moderate	28	sORFs_org_Human	Alternative Downstream sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
97029	48	ATG ...	MEL ...	Ribo-seq	ATG	moderate	23	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
895219	39	TAT ...	YPS ...	Ribo-seq	TAT	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1191	237	TTG ...	LGT ...	Ribo-seq	TTG		32	sORFs_org_Human	Alternative Downstream sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
406048	225	AAT ...	NNE ...	Ribo-seq	AAT		2	sORFs_org_Human	Alternative Downstream sORF	HCT116, Jurkat
94984	69	CTG ...	LIL ...	Ribo-seq	CTG		23	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
94978	42	TTG ...	LCF ...	Ribo-seq	TTG	moderate	19	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, LCL, MDA-MB-231, RPE-1, THP-1
94992	51	ATG ...	MGI ...	Ribo-seq	ATG		18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
901312	30	TAC ...	YLS ...	Ribo-seq	TAC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1173	102	CTG ...	LVS ...	Ribo-seq	CTG		21	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
95008	39	ATG ...	MIQ ...	Ribo-seq	ATG	weak	24	sORFs_org_Human	Alternative Downstream sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
895239	57	TGG ...	WNL ...	Ribo-seq	TGG	moderate	2	sORFs_org_Human	Alternative Downstream sORF	HEK293, Jurkat
1176	87	TTG ...	LMT ...	Ribo-seq	TTG		26	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
1197	51	ATG ...	MSK ...	Ribo-seq	ATG		21	sORFs_org_Human	Alternative Downstream sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
94996	75	ATG ...	MKC ...	Ribo-seq	ATG	moderate	24	sORFs_org_Human	Alternative Downstream sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
406046	48	TAC ...	YQN ...	Ribo-seq	TAC		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, HEK293
97048	33	GTG ...	VAR ...	Ribo-seq	GTG	strong	24	sORFs_org_Human	Downstream sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
895213	51	AGA ...	RKL ...	Ribo-seq	AGA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
274547	36	TTG ...	LIN ...	Ribo-seq	TTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, LCL, MDA-MB-231, THP-1
895226	30	AGA ...	RLK ...	Ribo-seq	AGA	weak	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
97041	45	TTG ...	LEY ...	Ribo-seq	TTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231
94990	57	CTG ...	LVQ ...	Ribo-seq	CTG	strong	22	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
97027	51	TTG ...	LTN ...	Ribo-seq	TTG		26	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1184	48	TTG ...	LPE ...	Ribo-seq	TTG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1
95006	30	ATG ...	MKM ...	Ribo-seq	ATG		23	sORFs_org_Human	Alternative Downstream sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
895245	36	ATC ...	IQP ...	Ribo-seq	ATC	moderate	1	sORFs_org_Human	Alternative Downstream sORF	Jurkat
94980	96	TTG ...	LMT ...	Ribo-seq	TTG		24	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
404358	207	AAT ...	NNE ...	Ribo-seq	AAT		2	sORFs_org_Human	Alternative Downstream sORF	HCT116, Jurkat
1178	84	ATG ...	MTK ...	Ribo-seq	ATG		26	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
895230	39	TAC ...	YLS ...	Ribo-seq	TAC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
3108697	93	CTG ...	LRP ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF Upstream	hES
94976	36	CTG ...	LVS ...	Ribo-seq	CTG		24	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1205	108	TTG ...	LLS ...	Ribo-seq	TTG		31	sORFs_org_Human	Alternative Downstream sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
94998	198	GTG ...	VWP ...	Ribo-seq	GTG		18	sORFs_org_Human	Alternative Downstream sORF	Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF
404354	30	TAC ...	YQN ...	Ribo-seq	TAC		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, HEK293, Jurkat
901315	45	AAA ...	KTW ...	Ribo-seq	AAA		1	sORFs_org_Human	Alternative Downstream sORF	Jurkat
895243	90	ATC ...	IYD ...	Ribo-seq	ATC	weak	1	sORFs_org_Human	Alternative Downstream sORF	Jurkat
406050	144	TCC ...	SHV ...	Ribo-seq	TCC		1	sORFs_org_Human	Alternative Downstream sORF	HCT116
895209	36	TTG ...	LEI ...	Ribo-seq	TTG		13	sORFs_org_Human	sORF Upstream	BJ, Blood, HAP1, HEK293, hES, Jurkat, MDA-MB-231, MM1S, RPE-1
1195	204	GTG ...	VES ...	Ribo-seq	GTG		32	sORFs_org_Human	Alternative Downstream sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
895217	63	GGA ...	GSE ...	Ribo-seq	GGA	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
895215	51	TGC ...	CRI ...	Ribo-seq	TGC	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
632665	51	CTG ...	LRP ...	Ribo-seq	CTG		10	sORFs_org_Human	sORF Upstream	HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1
94988	57	TTG ...	LPE ...	Ribo-seq	TTG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231
895221	66	ATT ...	IYT ...	Ribo-seq	ATT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1309691	57	TAC ...	YPL ...	Ribo-seq	TAC		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	HEK293
1193	216	GTG ...	VWP ...	Ribo-seq	GTG		32	sORFs_org_Human	Alternative Downstream sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
895228	51	TTT ...	FWP ...	Ribo-seq	TTT	weak	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
94974	60	ATG ...	MCL ...	Ribo-seq	ATG	moderate	26	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
406053	105	CTC ...	LSK ...	Ribo-seq	CTC		1	sORFs_org_Human	Alternative Downstream sORF	HCT116
404356	54	GTA ...	VPM ...	Ribo-seq	GTA	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	HCT116
895234	30	ACC ...	TTF ...	Ribo-seq	ACC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
94982	93	ATG ...	MTK ...	Ribo-seq	ATG		24	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
404352	42	TAT ...	YGR ...	Ribo-seq	TAT		8	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Breast, HCT116, HEK293, HeLa, Jurkat, THP-1
94986	63	TTG ...	LAL ...	Ribo-seq	TTG		19	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
1186	36	TTG ...	LEY ...	Ribo-seq	TTG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1
94994	219	TTG ...	LGT ...	Ribo-seq	TTG		20	sORFs_org_Human	Alternative Downstream sORF	Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, THP-1, U2OS
1199	129	TTG ...	LDE ...	Ribo-seq	TTG		31	sORFs_org_Human	Alternative Downstream sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
632663	57	CTG ...	LPL ...	Ribo-seq	CTG		10	sORFs_org_Human	sORF Upstream	HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1
895241	39	AAA ...	KTW ...	Ribo-seq	AAA		1	sORFs_org_Human	Alternative Downstream sORF	Jurkat
1182	54	TTG ...	LAL ...	Ribo-seq	TTG		19	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
1201	36	ATG ...	MKM ...	Ribo-seq	ATG		19	sORFs_org_Human	Alternative Downstream sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
95000	186	GTG ...	VES ...	Ribo-seq	GTG		16	sORFs_org_Human	Alternative Downstream sORF	Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF
895236	87	GCA ...	ALP ...	Ribo-seq	GCA	weak	2	sORFs_org_Human	Alternative Downstream sORF	HEK293, Jurkat
95004	45	ATG ...	MSK ...	Ribo-seq	ATG		27	sORFs_org_Human	Alternative Downstream sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
97031	42	TTG ...	LCI ...	Ribo-seq	TTG	moderate	23	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
95002	45	ATG ...	MET ...	Ribo-seq	ATG	moderate	25	sORFs_org_Human	Downstream sORF	BJ, Blood, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
895247	48	AGC ...	SQT ...	Ribo-seq	AGC	weak	2	sORFs_org_Human	Downstream sORF	HEK293, Jurkat
274536	51	GTG ...	VKR ...	Ribo-seq	GTG	moderate	16	sORFs_org_Human	InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
3199326	36	AGT ...	SGS ...	Ribo-seq	AGT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
1180	60	CTG ...	LIL ...	Ribo-seq	CTG		19	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, THP-1

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