Transcript 11579 | MetamORF

Transcript

ID CARD

MetamORF ID

11579

ENST00000548173

Name

PRIM1-203

Strand

Biotype

retained_intron

Start-end positions

56746146-56752339

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AAT ...

Genome browsers

UCSC

Gene

HGNC:9369

Aliases

ENSG00000198056,
HGNC:9369, NCBI:5557, OFF:PRIM1,
PRIM1

Chr 12

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
923000	141	TGG ...	WRR ...	Ribo-seq	TGG		5	sORFs_org_Human	Intronic sORF	BJ, Breast, HEK293, Jurkat
1141822	135	CTG ...	LLK ...	Ribo-seq	CTG		2	sORFs_org_Human	Intronic sORF	HEK293
923002	156	GAG ...	EFR ...	Ribo-seq	GAG		1	sORFs_org_Human	Intronic sORF	Jurkat
922998	132	TTG ...	LTP ...	Ribo-seq	TTG		5	sORFs_org_Human	Intronic sORF	BJ, HEK293, Jurkat
301090	63	ATG ...	MSN ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Intronic sORF	LCL
411384	81	ATT ...	ILE ...	Ribo-seq	ATT		1	sORFs_org_Human	Intronic sORF	HCT116
301092	69	CTG ...	LTM ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Intronic sORF	LCL
411386	123	GTA ...	VYS ...	Ribo-seq	GTA		1	sORFs_org_Human	Intronic sORF	HCT116
11578	57	CTG ...	LVF ...	Ribo-seq	CTG	strong	17	sORFs_org_Human	Intronic sORF	guo_2014, HEK293, HeLa, hES, HFF, LCL, RPE-1, THP-1, U2OS
11583	93	GTG ...	VKL ...	Ribo-seq	GTG	moderate	13	sORFs_org_Human	Intronic sORF	guo_2014, HEK293, HeLa, hES, HFF, RPE-1, THP-1, U2OS
538708	39	GTG ...	VLD ...	Ribo-seq	GTG	weak	3	sORFs_org_Human	Intronic sORF	Blood, hES, U2OS
108311	126	CTG ...	LEK ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	HEK293
301088	36	CTG ...	LQT ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	Intronic sORF	Blood, HeLa, LCL, MDA-MB-231
922994	30	CTA ...	LSL ...	Ribo-seq	CTA		1	sORFs_org_Human	Intronic sORF	Jurkat
922996	84	TCT ...	SFP ...	Ribo-seq	TCT		1	sORFs_org_Human	Intronic sORF	Jurkat
923004	33	GTG ...	VAS ...	Ribo-seq	GTG	strong	7	sORFs_org_Human	Intronic sORF	HEK293, hES, Jurkat, MDA-MB-231, RPE-1
11581	87	CTG ...	LGA ...	Ribo-seq	CTG	strong	11	sORFs_org_Human	Intronic sORF	guo_2014, HEK293, HeLa, hES, HFF, RPE-1, U2OS
538706	36	CTG ...	LDP ...	Ribo-seq	CTG	strong	4	sORFs_org_Human	Intronic sORF	Blood, hES, MDA-MB-231, U2OS
922983	135	GCA ...	ADI ...	Ribo-seq	GCA		1	sORFs_org_Human	Intronic sORF	Jurkat
1141827	48	GTG ...	VVI ...	Ribo-seq	GTG	moderate	5	sORFs_org_Human	Intronic sORF	HEK293, hES, MDA-MB-231, RPE-1
1141824	144	CTG ...	LPE ...	Ribo-seq	CTG		3	sORFs_org_Human	Intronic sORF	HEK293, hES

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