Transcript 11409 | MetamORF

Transcript

ID CARD

MetamORF ID

11409

ENST00000546388

Name

CNPY2-202

Strand

Biotype

retained_intron

Start-end positions

56314650-56315897

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CGG ...

Genome browsers

UCSC

Gene

HGNC:13529

Aliases

Cnpy2,
CNPY2, ENSG00000257727, HGNC:13529,
HP10390, NCBI:10330, OFF:CNPY2,
TMEM4, ZSIG9

Chr 12

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
11421	78	TTG ...	LAG ...	Ribo-seq	TTG	strong	30	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
11408	57	GTG ...	VEV ...	Ribo-seq	GTG	strong	13	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, hES, LCL, RPE-1, THP-1, U2OS
1829620	36	ATG ...	MKF ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	Intronic sORF	HeLa
108190	171	ATG ...	MGN ...	Ribo-seq	ATG	strong	11	sORFs_org_Human	Intronic sORF	HEK293, HEK293T, HeLa, hES, Jurkat, MM1S, RPE-1, THP-1, U2OS
922807	78	CCA ...	PDG ...	Ribo-seq	CCA	strong	1	sORFs_org_Human	Intronic sORF	Jurkat
11427	183	TTG ...	LGG ...	Ribo-seq	TTG		12	sORFs_org_Human	Intronic sORF	HEK293, HeLa, hES, HFF, MM1S
922810	162	AGG ...	RAL ...	Ribo-seq	AGG	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
411318	108	CCC ...	PHY ...	Ribo-seq	CCC	weak	4	sORFs_org_Human	Intronic sORF	HCT116, HeLa, Jurkat, THP-1
922805	33	CCA ...	PNK ...	Ribo-seq	CCA	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
1301944	105	ACG ...	TAA ...	Ribo-seq	ACG		1	sORFs_org_Human	Intronic sORF	BJ
11415	153	GTG ...	VDE ...	Ribo-seq	GTG	moderate	27	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
11417	156	CTG ...	LVD ...	Ribo-seq	CTG	strong	27	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
11425	117	GTG ...	VER ...	Ribo-seq	GTG	strong	33	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
11419	39	CTG ...	LGS ...	Ribo-seq	CTG	moderate	28	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
11423	84	CTG ...	LGL ...	Ribo-seq	CTG	strong	29	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
11413	123	GTG ...	VDP ...	Ribo-seq	GTG	moderate	27	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
11411	60	GTG ...	VVE ...	Ribo-seq	GTG	moderate	13	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, hES, LCL, RPE-1, THP-1, U2OS
108188	84	TTG ...	LPR ...	Ribo-seq	TTG	moderate	19	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1322476	48	ATG ...	MFY ...	Ribo-seq	ATG		1	sORFs_org_Human	Intronic sORF	HEK293

Export data