Transcript 11154 | MetamORF

Transcript

ID CARD

MetamORF ID

11154

ENST00000550407

Name

TARBP2-215

Strand

Biotype

protein_coding

Start-end positions

53502051-53506396

CDS Start-stop positions

-53505806

CDS Relative positions

Sequences

Transcript sequence

CCC ...

Genome browsers

UCSC

Gene

HGNC:11569

Aliases

ENSG00000139546,
HGNC:11569, NCBI:6895, OFF:TARBP2,
TARBP2, Trbp

Chr 12

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1829078	42	GTG ...	VGA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	sORF	HeLa
2003042	75	CTG ...	LSA ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF	HeLa
707629	168	CTG ...	LDI ...	Ribo-seq	CTG		2	sORFs_org_Human	sORF	hES, Jurkat
107758	126	CTG ...	LVE ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	sORF	HEK293, hES
1829064	93	CTG ...	LLF ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	sORF	HeLa
2963727	96	GTG ...	VCH ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	sORF	hES
1829070	51	ATG ...	MYL ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	sORF	HeLa
2344721	60	TTG ...	LVL ...	Ribo-seq	TTG		1	sORFs_org_Human	sORF	MDA-MB-231
2963725	117	CTG ...	LST ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	sORF	hES
1829062	81	TTG ...	LLP ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	sORF	HeLa
1829066	84	CTG ...	LPL ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	sORF	HeLa
1829072	45	CTG ...	LRS ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	sORF	HeLa
1829056	135	GTG ...	VKP ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	sORF	HeLa
1829068	78	CTG ...	LGS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	sORF	HeLa
1829080	117	GTG ...	VPS ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	sORF	HeLa
1829060	90	GTG ...	VHP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	sORF	HeLa
107760	123	GTG ...	VEL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	sORF	HEK293, hES
11153	36	CTG ...	LQY ...	Ribo-seq	CTG	moderate	9	sORFs_org_Human	sORF	HEK293, HeLa, hES, HFF, RPE-1, U2OS
2344723	57	GTG ...	VLC ...	Ribo-seq	GTG		1	sORFs_org_Human	sORF	MDA-MB-231
1829076	123	CTG ...	LWV ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	sORF	HeLa
107754	153	CTG ...	LSL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	sORF	HEK293, hES
2003040	93	CTG ...	LSP ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF	HeLa
1829074	54	CTG ...	LVP ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	sORF	HeLa
1829058	96	ATG ...	MDV ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	sORF	HeLa
107756	147	CTG ...	LSG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	sORF	HEK293, hES

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