Transcript 11080 | MetamORF

Transcript

ID CARD

MetamORF ID

11080

ENST00000426431

Name

SP1-202

Strand

Biotype

protein_coding

Start-end positions

53380639-53416446

CDS Start-stop positions

53381673-53411240

CDS Relative positions

Sequences

Transcript sequence

AGC ...

Genome browsers

UCSC

Gene

HGNC:11205

Aliases

ENSG00000185591,
HGNC:11205, NCBI:6667, OFF:SP1,
SP1

Chr 12

ORFs

95 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
922130	99	CAG ...	QQH ...	Ribo-seq	CAG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
922142	123	CAA ...	QTL ...	Ribo-seq	CAA	weak	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
922124	111	TGG ...	WVP ...	Ribo-seq	TGG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2334623	228	CTG ...	LAK ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
1829003	90	TTG ...	LLE ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
922159	45	CCC ...	PNS ...	Ribo-seq	CCC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
922154	51	CAC ...	HCE ...	Ribo-seq	CAC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
107732	135	TTG ...	LPH ...	Ribo-seq	TTG	weak	15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
300151	30	CTG ...	LST ...	Ribo-seq	CTG	weak	11	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
640944	90	GTG ...	VFP ...	Ribo-seq	GTG	moderate	7	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, MDA-MB-231, THP-1
922144	111	CCA ...	PSS ...	Ribo-seq	CCA	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
707605	60	AGG ...	RNP ...	Ribo-seq	AGG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
11118	60	GTG ...	VTT ...	Ribo-seq	GTG	moderate	8	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, hES, LCL, MDA-MB-231, RPE-1, U2OS
1828997	54	CTG ...	LTQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
11114	39	CTG ...	LVI ...	Ribo-seq	CTG	moderate	21	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, guo_2014, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
11102	108	ATG ...	MLL ...	Ribo-seq	ATG	weak	7	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
11112	45	GTG ...	VYL ...	Ribo-seq	GTG	weak	18	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
1829005	63	CTG ...	LMP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1050790	216	TTG ...	LMG ...	Ribo-seq	TTG	weak	7	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, MDA-MB-231
1828995	69	GTG ...	VFK ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1828993	78	GTG ...	VEG ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
922161	126	GGC ...	GHL ...	Ribo-seq	GGC		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, Jurkat
922118	234	ACA ...	TDS ...	Ribo-seq	ACA	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
300145	57	CTG ...	LSP ...	Ribo-seq	CTG	moderate	10	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231, THP-1, U2OS
922152	30	CTT ...	LPF ...	Ribo-seq	CTT	weak	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
922122	174	AGG ...	RQS ...	Ribo-seq	AGG	weak	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
11116	30	CTG ...	LWE ...	Ribo-seq	CTG	moderate	19	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, guo_2014, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
11106	60	GTG ...	VHW ...	Ribo-seq	GTG	weak	9	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231
1828989	93	ATG ...	MLE ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
11090	75	GTG ...	VDH ...	Ribo-seq	GTG	moderate	10	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231
11092	129	CTG ...	LFQ ...	Ribo-seq	CTG	moderate	11	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, LCL, MDA-MB-231
11079	153	CTG ...	LGP ...	Ribo-seq	CTG	strong	6	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, hES, MDA-MB-231, THP-1
922132	72	TAC ...	YQW ...	Ribo-seq	TAC	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
922146	204	GAC ...	DST ...	Ribo-seq	GAC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
922136	42	CAC ...	HPR ...	Ribo-seq	CAC	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
307870	255	GTG ...	VKE ...	Ribo-seq	GTG		5	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, LCL, MDA-MB-231
300158	78	ATG ...	MDR ...	Ribo-seq	ATG	moderate	9	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, LCL, MDA-MB-231, THP-1, U2OS
1829009	30	GTG ...	VLQ ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1828999	39	GTG ...	VLF ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
922177	102	CAC ...	HQY ...	Ribo-seq	CAC	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
11096	210	TTG ...	LAD ...	Ribo-seq	TTG	moderate	10	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, THP-1, U2OS
1050802	159	CTG ...	LVK ...	Ribo-seq	CTG	strong	6	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231
300147	30	ATG ...	MYS ...	Ribo-seq	ATG	moderate	11	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, THP-1, U2OS
11104	105	CTG ...	LLN ...	Ribo-seq	CTG	moderate	7	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, Jurkat, MDA-MB-231
922140	195	TGT ...	CQG ...	Ribo-seq	TGT	weak	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
1050794	195	TTG ...	LLP ...	Ribo-seq	TTG	moderate	6	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231
922138	96	AGA ...	RHL ...	Ribo-seq	AGA	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
11086	99	CTG ...	LPA ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	InCDS Overlapping sORF	HEK293, hES, MDA-MB-231
11110	72	CTG ...	LAY ...	Ribo-seq	CTG	strong	18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
1829007	60	ATG ...	MPF ...	Ribo-seq	ATG	weak	2	sORFs_org_Human Johnstone2016	Alternative Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
1050798	186	CTG ...	LGP ...	Ribo-seq	CTG	moderate	6	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231
11094	117	CTG ...	LVP ...	Ribo-seq	CTG	strong	9	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231
922157	60	AGG ...	RNP ...	Ribo-seq	AGG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
922165	75	ATG ...	MSY ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1735706	102	GTG ...	VEA ...	Ribo-seq	GTG	strong	4	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231
640956	33	TTG ...	LPA ...	Ribo-seq	TTG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231, THP-1
707611	30	ACA ...	TEA ...	Ribo-seq	ACA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
640954	45	GTG ...	VRR ...	Ribo-seq	GTG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231, THP-1
922175	105	TAC ...	YHQ ...	Ribo-seq	TAC	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
922134	72	GAT ...	DHQ ...	Ribo-seq	GAT	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
484637	177	ATG ...	MAR ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HEK293T
1050804	135	GTG ...	VQT ...	Ribo-seq	GTG	weak	6	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231
11088	51	ATG ...	MPI ...	Ribo-seq	ATG	weak	9	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Blood, Brain_tumor, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, THP-1
922163	36	GTC ...	VIL ...	Ribo-seq	GTC	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, Jurkat
2551924	189	GTG ...	VGK ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
2334638	39	CTG ...	LPL ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, hES, MDA-MB-231
1050792	213	ATG ...	MGN ...	Ribo-seq	ATG	moderate	8	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Blood, Brain_tumor, HAP1, HEK293, HeLa, HFF, MDA-MB-231
11108	120	CTG ...	LWE ...	Ribo-seq	CTG	moderate	16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
922120	198	GAA ...	EWE ...	Ribo-seq	GAA	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
11084	126	CTG ...	LSP ...	Ribo-seq	CTG	moderate	6	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, hES, MDA-MB-231, THP-1
1828991	30	CTG ...	LWR ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1515686	90	CTG ...	LEA ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, MDA-MB-231
2334635	66	GTG ...	VGQ ...	Ribo-seq	GTG	strong	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, hES, MDA-MB-231
307858	267	ATG ...	MGA ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
300149	51	ATG ...	MGT ...	Ribo-seq	ATG	moderate	10	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, LCL, MDA-MB-231, RPE-1, THP-1
922173	117	TTC ...	FSP ...	Ribo-seq	TTC	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1829001	36	TTG ...	LFN ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
11082	138	GTG ...	VAH ...	Ribo-seq	GTG	strong	5	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, hES, MDA-MB-231
640933	84	CTG ...	LLC ...	Ribo-seq	CTG	weak	7	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231, THP-1
922179	84	GGA ...	GGH ...	Ribo-seq	GGA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1050796	192	CTG ...	LPL ...	Ribo-seq	CTG	weak	6	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231
1735737	90	GTG ...	VWA ...	Ribo-seq	GTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
1828987	96	CTG ...	LML ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
922167	30	ACA ...	TEA ...	Ribo-seq	ACA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
640958	75	CTG ...	LSR ...	Ribo-seq	CTG	weak	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231, THP-1
11100	33	CTG ...	LLP ...	Ribo-seq	CTG	weak	8	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231, THP-1
11098	42	TTG ...	LPQ ...	Ribo-seq	TTG	weak	8	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231, THP-1
922169	60	CAG ...	QVQ ...	Ribo-seq	CAG	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
922148	105	CAA ...	QHH ...	Ribo-seq	CAA	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
922126	72	GAC ...	DYH ...	Ribo-seq	GAC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
922128	66	GCT ...	APF ...	Ribo-seq	GCT	weak	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
1050800	165	ATG ...	MVL ...	Ribo-seq	ATG	strong	6	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231
1735708	87	TTG ...	LLL ...	Ribo-seq	TTG	weak	5	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231
707607	45	CCC ...	PNS ...	Ribo-seq	CCC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
922171	45	GTG ...	VAL ...	Ribo-seq	GTG	strong	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat, MDA-MB-231

Export data