Transcript 110392

Transcript

ID CARD

MetamORF ID

110392

ENST00000552375

Name

DDX54-210

Strand

Biotype

protein_coding

Start-end positions

113175036-113183802

CDS Start-stop positions

-113180983

CDS Relative positions

Sequences

Transcript sequence

AAA ...

Genome browsers

UCSC

Gene

HGNC:20084

Aliases

APR-5,
DDX54, DP97, ENSG00000123064,
HGNC:20084, MGC2835, NCBI:79039,
OFF:DDX54

Chr 12

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
306459	84	ATG ...	MWS ...	Ribo-seq	ATG		2	sORFs_org_Human	sORF	LCL, MDA-MB-231
110394	189	CTG ...	LPT ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF	HEK293
306457	54	GTG ...	VPR ...	Ribo-seq	GTG		2	sORFs_org_Human	sORF	HAP1, LCL
2339964	120	GTG ...	VAR ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	sORF	MDA-MB-231
110396	207	CTG ...	LGP ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF	HEK293
306463	153	CTG ...	LSF ...	Ribo-seq	CTG		3	sORFs_org_Human	sORF	HeLa, LCL, MDA-MB-231
306455	210	CTG ...	LPS ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF	LCL
306465	189	CTG ...	LWS ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF	LCL
1831609	66	GTG ...	VPR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	sORF	HeLa
306461	129	CTG ...	LED ...	Ribo-seq	CTG		3	sORFs_org_Human	sORF	HeLa, LCL, MDA-MB-231
2339966	156	ATG ...	MAR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	sORF	HeLa, MDA-MB-231
2339962	117	CTG ...	LLP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	sORF	HEK293, MDA-MB-231
110391	153	GTG ...	VEP ...	Ribo-seq	GTG		1	sORFs_org_Human	sORF	HEK293

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