Transcript 10886 | MetamORF

Transcript

ID CARD

MetamORF ID

10886

ENST00000548158

Name

RACGAP1-210

Strand

Biotype

retained_intron

Start-end positions

49999310-50004271

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATC ...

Genome browsers

UCSC

Gene

HGNC:9804

Aliases

ENSG00000161800,
HGNC:9804, MgcRacGAP, NCBI:29127,
OFF:RACGAP1, RACGAP1

Chr 12

ORFs

15 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
299427	84	ATG ...	MMA ...	Ribo-seq	ATG	weak	13	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
299425	81	ATG ...	MAG ...	Ribo-seq	ATG	strong	13	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
299429	93	CTG ...	LFP ...	Ribo-seq	CTG	weak	13	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
921586	57	CCA ...	PLL ...	Ribo-seq	CCA	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
107463	66	GTG ...	VKT ...	Ribo-seq	GTG		2	sORFs_org_Human	Intronic sORF	HEK293
107458	51	GTG ...	VPY ...	Ribo-seq	GTG	moderate	17	sORFs_org_Human	Intronic sORF	BJ, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, RPE-1, THP-1, U2OS
299420	51	TTG ...	LRL ...	Ribo-seq	TTG	weak	16	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
299423	63	CTG ...	LCP ...	Ribo-seq	CTG	moderate	13	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
107460	69	GTG ...	VST ...	Ribo-seq	GTG	moderate	23	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, RPE-1, THP-1, U2OS
10885	105	GTG ...	VTV ...	Ribo-seq	GTG	moderate	25	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
299418	45	CTG ...	LCH ...	Ribo-seq	CTG	moderate	16	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
1321874	69	TTG ...	LVK ...	Ribo-seq	TTG		1	sORFs_org_Human	Intronic sORF	HEK293
921582	33	AGC ...	SRR ...	Ribo-seq	AGC	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
1321871	51	CTG ...	LKK ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	HEK293
921584	48	AGA ...	RLC ...	Ribo-seq	AGA	weak	1	sORFs_org_Human	Intronic sORF	Jurkat

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