Transcript 108521

Transcript

ID CARD

MetamORF ID

108521

ENST00000549307

Name

OS9-210

Strand

Biotype

retained_intron

Start-end positions

57695496-57721557

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTT ...

Genome browsers

UCSC

Gene

HGNC:16994

Aliases

ENSG00000135506,
ERLEC2, HGNC:16994, NCBI:10956,
OFF:OS9, OS-9, OS9

Chr 12

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
923207	48	ACG ...	TLP ...	Ribo-seq	ACG	weak	3	sORFs_org_Human	Intronic sORF	HeLa, Jurkat, THP-1
923203	93	AGC ...	SIV ...	Ribo-seq	AGC		1	sORFs_org_Human	Intronic sORF	Jurkat
642053	123	CTG ...	LPH ...	Ribo-seq	CTG		9	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HEK293, HeLa, HFF, MM1S, RPE-1, THP-1
1051141	132	TTG ...	LQI ...	Ribo-seq	TTG		1	sORFs_org_Human	Intronic sORF	HEK293
3121905	111	GTG ...	VKS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Intronic sORF	hES
923211	30	CTA ...	LWQ ...	Ribo-seq	CTA	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
642057	54	ATG ...	MGP ...	Ribo-seq	ATG		10	sORFs_org_Human	Intronic sORF	Blood, Brain, HEK293, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1
301413	246	CTG ...	LPP ...	Ribo-seq	CTG		11	sORFs_org_Human	Intronic sORF	BJ, guo_2014, HEK293, hES, LCL, MM1S, RPE-1, THP-1, U2OS
642051	150	TTG ...	LLS ...	Ribo-seq	TTG		3	sORFs_org_Human	Intronic sORF	Brain, MM1S, THP-1
923205	87	GTC ...	VLN ...	Ribo-seq	GTC		1	sORFs_org_Human	Intronic sORF	Jurkat
301417	207	TTG ...	LGI ...	Ribo-seq	TTG		17	sORFs_org_Human	Intronic sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
923197	39	TTA ...	LWT ...	Ribo-seq	TTA		3	sORFs_org_Human	Intronic sORF	HeLa, Jurkat, THP-1
923209	42	CCA ...	PQP ...	Ribo-seq	CCA	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
642055	60	ATG ...	MAM ...	Ribo-seq	ATG		13	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1
539306	63	CTG ...	LST ...	Ribo-seq	CTG	moderate	7	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, hES, RPE-1, THP-1, U2OS
923201	99	CCA ...	PSS ...	Ribo-seq	CCA		3	sORFs_org_Human	Intronic sORF	HeLa, Jurkat, THP-1
301388	30	TTG ...	LSD ...	Ribo-seq	TTG	weak	11	sORFs_org_Human	Intronic sORF	BJ, HeLa, hES, LCL, MM1S, RPE-1, THP-1, U2OS
923213	51	GGT ...	GPS ...	Ribo-seq	GGT		1	sORFs_org_Human	Intronic sORF	Jurkat
108520	42	CTG ...	LLW ...	Ribo-seq	CTG		22	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
301415	225	TTG ...	LTH ...	Ribo-seq	TTG		16	sORFs_org_Human	Intronic sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
642089	93	CTG ...	LCV ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Intronic sORF	THP-1
923199	33	ACG ...	TPH ...	Ribo-seq	ACG		1	sORFs_org_Human	Intronic sORF	Jurkat
642059	33	ATG ...	MGG ...	Ribo-seq	ATG		6	sORFs_org_Human	Intronic sORF	Blood, HEK293, HEK293T, MDA-MB-231, MM1S, THP-1

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