Transcript 1079 | MetamORF

Transcript

ID CARD

MetamORF ID

1079

ENST00000444045

Name

RPA2-205

Strand

Biotype

protein_coding

Start-end positions

27897005-27914588

CDS Start-stop positions

-27914443

CDS Relative positions

Sequences

Transcript sequence

GAC ...

Genome browsers

UCSC

Gene

HGNC:10290

Aliases

ENSG00000117748,
HGNC:10290, NCBI:6118, OFF:RPA2,
RPA2

Chr 1

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
480706	42	CTG ...	LHP ...	Ribo-seq	CTG		7	sORFs_org_Human	sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES
1294791	105	TTG ...	LMK ...	Ribo-seq	TTG		1	sORFs_org_Human	sORF	HEK293T
1296059	96	ATG ...	MAA ...	Ribo-seq	ATG		9	sORFs_org_Human	sORF	Blood, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1
1129494	57	TTG ...	LWG ...	Ribo-seq	TTG	weak	2	sORFs_org_Human	sORF	HEK293, HEK293T
1081	96	TTG ...	LCP ...	Ribo-seq	TTG		9	sORFs_org_Human	sORF	Blood, HAP1, HEK293, HeLa, LCL
283358	30	ATG ...	MSS ...	Ribo-seq	ATG	weak	9	sORFs_org_Human	sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1
1309998	48	TAT ...	YSP ...	Ribo-seq	TAT	weak	1	sORFs_org_Human	sORF	HEK293
935584	111	GTG ...	VDS ...	Ribo-seq	GTG		11	sORFs_org_Human	sORF	Blood, Brain, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1
246019	213	GTG ...	VGR ...	Ribo-seq	GTG		8	sORFs_org_Human	sORF	Blood, Brain, HEK293, HEK293T, HeLa, LCL, RPE-1
1126721	147	TTG ...	LCP ...	Ribo-seq	TTG		4	sORFs_org_Human	sORF	HEK293, HEK293T, HeLa
898827	51	GCA ...	AHC ...	Ribo-seq	GCA	weak	1	sORFs_org_Human	sORF	Jurkat
1086425	204	TTG ...	LDR ...	Ribo-seq	TTG		7	sORFs_org_Human	sORF	Blood, HEK293, HEK293T, hES, MDA-MB-231
1126719	117	CTG ...	LPL ...	Ribo-seq	CTG		2	sORFs_org_Human	sORF	HEK293, HEK293T
1126709	81	ATG ...	MLR ...	Ribo-seq	ATG		2	sORFs_org_Human	sORF	HEK293, HEK293T
1126715	102	ATG ...	MKC ...	Ribo-seq	ATG		2	sORFs_org_Human	sORF	HEK293, HEK293T
1078	39	CTG ...	LYY ...	Ribo-seq	CTG	moderate	16	sORFs_org_Human	sORF	Blood, Brain, Flp-In_T-REx-293, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
3199459	36	TTT ...	FAE ...	Ribo-seq	TTT	moderate	1	sORFs_org_Human	sORF	HEK293
480726	81	CTG ...	LWF ...	Ribo-seq	CTG	moderate	11	sORFs_org_Human	sORF	BJ, HEK293, HEK293T, HeLa, hES, MM1S, RPE-1, THP-1, U2OS
1126711	87	TTG ...	LGM ...	Ribo-seq	TTG		2	sORFs_org_Human	sORF	HEK293, HEK293T
1294799	258	ATG ...	MAA ...	Ribo-seq	ATG		6	sORFs_org_Human	sORF	Blood, HEK293, HEK293T, HeLa, MDA-MB-231
1294801	273	GTG ...	VDS ...	Ribo-seq	GTG		6	sORFs_org_Human	sORF	Blood, HEK293, HEK293T, HeLa, MDA-MB-231
480724	60	GTG ...	VVF ...	Ribo-seq	GTG	moderate	6	sORFs_org_Human	sORF	HEK293, HEK293T, MDA-MB-231, MM1S
100177	42	TTG ...	LDR ...	Ribo-seq	TTG		11	sORFs_org_Human	sORF	Blood, HEK293, HEK293T, hES, MDA-MB-231, THP-1
898794	39	CAC ...	HPW ...	Ribo-seq	CAC		1	sORFs_org_Human	sORF	Jurkat
1294796	216	GTG ...	VVV ...	Ribo-seq	GTG		4	sORFs_org_Human	sORF	HEK293, HEK293T, HeLa
898875	213	CGA ...	RKL ...	Ribo-seq	CGA		1	sORFs_org_Human	sORF	Jurkat
86948	183	ATG ...	MFF ...	Ribo-seq	ATG		14	sORFs_org_Human	sORF	Blood, HEK293, HEK293T, HeLa, hES, LCL

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