Transcript 107478

Transcript

ID CARD

MetamORF ID

107478

ENST00000472583

Name

ZMPSTE24-202

Strand

Biotype

processed_transcript

Start-end positions

40258239-40267836

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCA ...

Genome browsers

UCSC

Gene

HGNC:12877

Aliases

ENSG00000084073,
FACE-1, HGNC:12877, HGPS,
NCBI:10269, OFF:ZMPSTE24, PRO1,
STE24, Ste24p, ZMPSTE24

Chr 1

ORFs

28 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1141145	108	CTG ...	LLF ...	Ribo-seq	CTG		4	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293, HEK293, HeLa
107480	150	TTG ...	LWE ...	Ribo-seq	TTG		13	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293, guo_2014, HEK293, HeLa, hES, HFF, THP-1, U2OS
1010301	90	GTG ...	VYL ...	Ribo-seq	GTG		2	sORFs_org_Human	ncRNA sORF	guo_2014, HEK293
299977	141	GTG ...	VGI ...	Ribo-seq	GTG		14	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
107482	111	GTG ...	VLL ...	Ribo-seq	GTG		5	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293, HEK293, HeLa
410912	144	GAT ...	DVG ...	Ribo-seq	GAT		5	sORFs_org_Human	ncRNA sORF	HCT116, HEK293, HeLa, Jurkat, THP-1
107488	93	CTG ...	LKH ...	Ribo-seq	CTG		23	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HEK293, HEK293T, HeLa, hES, Jurkat, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
919956	174	GAG ...	ELG ...	Ribo-seq	GAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
920040	72	GAA ...	EGT ...	Ribo-seq	GAA		1	sORFs_org_Human	ncRNA sORF	Jurkat
299982	120	GTG ...	VGD ...	Ribo-seq	GTG		15	sORFs_org_Human	ncRNA sORF	BJ, Blood, HCT116, HEK293, HEK293T, HeLa, hES, LCL, MM1S, RPE-1, THP-1, U2OS
410943	90	GGA ...	GLY ...	Ribo-seq	GGA		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
107499	120	CTG ...	LDK ...	Ribo-seq	CTG		6	sORFs_org_Human	ncRNA sORF	guo_2014, HEK293, HeLa, hES
540916	69	CTG ...	LDS ...	Ribo-seq	CTG		4	sORFs_org_Human	ncRNA sORF	RPE-1, THP-1, U2OS
919928	36	TTT ...	FPG ...	Ribo-seq	TTT	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
919917	114	CCA ...	PWG ...	Ribo-seq	CCA	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
920024	111	AGC ...	STF ...	Ribo-seq	AGC		1	sORFs_org_Human	ncRNA sORF	Jurkat
107477	159	CTG ...	LDA ...	Ribo-seq	CTG		14	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293, guo_2014, HEK293, HeLa, hES, HFF, THP-1, U2OS
919975	156	GAT ...	DSE ...	Ribo-seq	GAT		1	sORFs_org_Human	ncRNA sORF	Jurkat
540923	66	GTG ...	VFS ...	Ribo-seq	GTG		4	sORFs_org_Human	ncRNA sORF	HEK293T, HeLa, THP-1, U2OS
410933	126	TAT ...	YQL ...	Ribo-seq	TAT		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
299965	177	CTG ...	LKE ...	Ribo-seq	CTG		15	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
919941	63	AGT ...	SVS ...	Ribo-seq	AGT		1	sORFs_org_Human	ncRNA sORF	Jurkat
919962	165	CAG ...	QIM ...	Ribo-seq	CAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
919952	180	CCA ...	PPE ...	Ribo-seq	CCA		1	sORFs_org_Human	ncRNA sORF	Jurkat
920009	117	GAT ...	DKS ...	Ribo-seq	GAT		1	sORFs_org_Human	ncRNA sORF	Jurkat
540918	54	TTG ...	LGD ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	U2OS
107493	84	TTG ...	LRN ...	Ribo-seq	TTG		22	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
410918	90	ACG ...	TLC ...	Ribo-seq	ACG	weak	2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat

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