Transcript 106914

Transcript

ID CARD

MetamORF ID

106914

ENST00000261191

Name

INTS13-201

Strand

Biotype

protein_coding

Start-end positions

26905181-26938321

CDS Start-stop positions

26905497-26936803

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

HGNC:20174

Aliases

ASUN,
C12orf11, ENSG00000064102, FLJ10637,
HGNC:20174, INTS13, Mat89Bb,
NCBI:55726, NET48, OFF:INTS13,
SPATA30

Chr 12

ORFs

43 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1514780	45	ATG ...	MEV ...	Ribo-seq	ATG	moderate	1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
298168	30	TTG ...	LYL ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL
307107	141	TTG ...	LLY ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
307101	96	TTG ...	LKT ...	Ribo-seq	TTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, LCL, MDA-MB-231
1520598	96	CTG ...	LLI ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative Downstream Overlapping sORF	BJ
1833473	105	TTG ...	LIW ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231
536981	36	GTG ...	VEK ...	Ribo-seq	GTG	strong	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, MDA-MB-231, U2OS
307091	63	TTG ...	LVQ ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL
3233485	51	CTG ...	LQI ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa
2343941	69	ATG ...	MNI ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, MDA-MB-231
1833471	87	ATG ...	MIL ...	Ribo-seq	ATG		4	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
1996744	57	ATG ...	MNR ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa
106913	36	GTG ...	VFV ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
298196	111	ATG ...	MAL ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1520596	81	CTG ...	LNY ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative Downstream Overlapping sORF	BJ
3229258	60	ATG ...	MLT ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
298170	42	GTG ...	VKT ...	Ribo-seq	GTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL
1520594	51	ATG ...	MGW ...	Ribo-seq	ATG		4	sORFs_org_Human Johnstone2016	Alternative Downstream Overlapping sORF	BJ, Brain_tumor, HEK293, HeLa, HFF, RPE-1
1741360	114	ATG ...	MKL ...	Ribo-seq	ATG		3	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF
307093	51	GTG ...	VEE ...	Ribo-seq	GTG		2	sORFs_org_Human	InCDS Overlapping sORF	LCL, MDA-MB-231
1734639	48	GTG ...	VKF ...	Ribo-seq	GTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
2332702	30	GTG ...	VQD ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1827561	57	TTG ...	LSE ...	Ribo-seq	TTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231
2871157	54	GTG ...	VKT ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa
2002578	159	CTG ...	LIP ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa
298166	111	ATG ...	MSD ...	Ribo-seq	ATG	moderate	7	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Brain_tumor, HEK293, HeLa, HFF, LCL, U2OS
1741362	123	TTG ...	LKW ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa
298164	99	ATG ...	MQE ...	Ribo-seq	ATG	moderate	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa, LCL, U2OS
1827563	33	ATG ...	MNN ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa
307103	108	ATG ...	MCE ...	Ribo-seq	ATG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231
307099	87	GTG ...	VSR ...	Ribo-seq	GTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL, MDA-MB-231
1741364	126	TTG ...	LLK ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa
298162	36	TTG ...	LAR ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
298172	45	TTG ...	LVK ...	Ribo-seq	TTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, LCL
920211	54	TGC ...	CRT ...	Ribo-seq	TGC	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1996741	99	CTG ...	LIP ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa
542422	39	ATG ...	MNR ...	Ribo-seq	ATG		9	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HEK293, HeLa, hES, HFF, U2OS
1996739	66	TTG ...	LLK ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa
3327112	21	ATG ...	MGD ...	Ribo-seq	ATG	moderate	1	Johnstone2016	sORF Upstream	Brain_tumor, HEK293, HeLa, HFF
1741367	54	TTG ...	LLQ ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, MDA-MB-231
307095	60	GTG ...	VKD ...	Ribo-seq	GTG		2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, LCL
307105	117	GTG ...	VIV ...	Ribo-seq	GTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231
3327097	2121	ATG ...	MKI ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF

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