Transcript 106750

Transcript

ID CARD

MetamORF ID

106750

ENST00000513632

Name

PABPC4-218

Strand

Biotype

retained_intron

Start-end positions

39565299-39568408

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

HGNC:8557

Aliases

APP-1,
ENSG00000090621, HGNC:8557, iPABP,
NCBI:8761, OFF:PABPC4, PABPC4

Chr 1

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
106749	120	TTG ...	LDD ...	Ribo-seq	TTG		9	sORFs_org_Human	Intronic sORF	Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF
410550	105	GAT ...	DDE ...	Ribo-seq	GAT		2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
917755	162	AAT ...	NFL ...	Ribo-seq	AAT		1	sORFs_org_Human	Intronic sORF	Jurkat
917749	57	AGT ...	SAK ...	Ribo-seq	AGT		1	sORFs_org_Human	Intronic sORF	Jurkat
917784	123	AAC ...	NLD ...	Ribo-seq	AAC		1	sORFs_org_Human	Intronic sORF	Jurkat
917733	51	TCG ...	SSA ...	Ribo-seq	TCG		1	sORFs_org_Human	Intronic sORF	Jurkat
917743	45	TGG ...	WKK ...	Ribo-seq	TGG	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
917790	129	ATT ...	IKN ...	Ribo-seq	ATT		1	sORFs_org_Human	Intronic sORF	Jurkat
106758	141	GTG ...	VNL ...	Ribo-seq	GTG		13	sORFs_org_Human	Intronic sORF	Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, RPE-1, THP-1
484331	33	CTG ...	LKK ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	Jurkat
917739	36	CAA ...	QRV ...	Ribo-seq	CAA	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
917723	297	GCA ...	AVT ...	Ribo-seq	GCA		1	sORFs_org_Human	Intronic sORF	Jurkat
917772	117	GAT ...	DDT ...	Ribo-seq	GAT		1	sORFs_org_Human	Intronic sORF	Jurkat

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