Transcript 105625

Transcript

ID CARD

MetamORF ID

105625

ENST00000545420

Name

TMEM138-212

Strand

Biotype

processed_transcript

Start-end positions

61364250-61368751

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGG ...

Genome browsers

UCSC

Gene

HGNC:26944

Aliases

ENSG00000149483,
HGNC:26944, HSPC196, JBTS16,
NCBI:51524, OFF:TMEM138, TMEM138

Chr 11

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
907917	111	AAA ...	KRL ...	Ribo-seq	AAA		1	sORFs_org_Human	ncRNA sORF	Jurkat
907905	192	GTA ...	VTT ...	Ribo-seq	GTA		1	sORFs_org_Human	ncRNA sORF	Jurkat
105631	282	CTG ...	LVN ...	Ribo-seq	CTG		18	sORFs_org_Human	ncRNA sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
907909	156	TGC ...	CCP ...	Ribo-seq	TGC		1	sORFs_org_Human	ncRNA sORF	Jurkat
105629	240	CTG ...	LTA ...	Ribo-seq	CTG		17	sORFs_org_Human	ncRNA sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, HFF, RPE-1, THP-1, U2OS
528623	96	CTG ...	LLL ...	Ribo-seq	CTG		12	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1, U2OS
105624	231	GTG ...	VYF ...	Ribo-seq	GTG		17	sORFs_org_Human	ncRNA sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
1506147	66	CTG ...	LGT ...	Ribo-seq	CTG		3	sORFs_org_Human	ncRNA sORF	BJ, hES, RPE-1
528617	117	CTG ...	LVL ...	Ribo-seq	CTG		12	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1, U2OS
1506149	57	GTG ...	VGC ...	Ribo-seq	GTG		3	sORFs_org_Human	ncRNA sORF	BJ, hES, RPE-1
917244	252	GGG ...	GTI ...	Ribo-seq	GGG		1	sORFs_org_Human	ncRNA sORF	Jurkat
528627	90	CTG ...	LSY ...	Ribo-seq	CTG		12	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1, U2OS
528619	114	GTG ...	VLS ...	Ribo-seq	GTG		13	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1, U2OS
528615	240	ATG ...	MCP ...	Ribo-seq	ATG		5	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, U2OS
528621	105	CTG ...	LQF ...	Ribo-seq	CTG		13	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1, U2OS
907911	147	ATG ...	MTS ...	Ribo-seq	ATG		3	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, Jurkat
528625	93	CTG ...	LLS ...	Ribo-seq	CTG		12	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1, U2OS
528629	54	CTG ...	LLQ ...	Ribo-seq	CTG		10	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES, RPE-1, THP-1, U2OS
105627	135	CTG ...	LFV ...	Ribo-seq	CTG		15	sORFs_org_Human	ncRNA sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
917242	213	ATC ...	ISL ...	Ribo-seq	ATC		1	sORFs_org_Human	ncRNA sORF	Jurkat
1440046	138	TTG ...	LSI ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	HeLa
907913	132	ATT ...	IPS ...	Ribo-seq	ATT		1	sORFs_org_Human	ncRNA sORF	Jurkat
917240	204	CAT ...	HVW ...	Ribo-seq	CAT		1	sORFs_org_Human	ncRNA sORF	Jurkat
907907	171	CTC ...	LCS ...	Ribo-seq	CTC		1	sORFs_org_Human	ncRNA sORF	Jurkat

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