Transcript 105274

Transcript

ID CARD

MetamORF ID

105274

ENST00000540620

Name

WDR74-211

Strand

Biotype

processed_transcript

Start-end positions

62834897-62839577

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTT ...

Genome browsers

UCSC

Gene

HGNC:25529

Aliases

ENSG00000133316,
FLJ10439, HGNC:25529, NCBI:54663,
Nsa1, OFF:WDR74, WDR74

Chr 11

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
105288	261	CTG ...	LEL ...	Ribo-seq	CTG		21	sORFs_org_Human	ncRNA sORF	BJ, Blood, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
105282	237	GTG ...	VCR ...	Ribo-seq	GTG		20	sORFs_org_Human	ncRNA sORF	BJ, Blood, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, U2OS
105286	255	CTG ...	LRV ...	Ribo-seq	CTG		21	sORFs_org_Human	ncRNA sORF	BJ, Blood, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
105276	156	CTG ...	LQG ...	Ribo-seq	CTG		18	sORFs_org_Human	ncRNA sORF	BJ, Blood, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, U2OS
409629	120	AAC ...	NVR ...	Ribo-seq	AAC		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
409631	150	GGC ...	GSE ...	Ribo-seq	GGC		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
105273	135	GTG ...	VFR ...	Ribo-seq	GTG		17	sORFs_org_Human	ncRNA sORF	BJ, Blood, guo_2014, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, U2OS
534117	117	GTG ...	VRN ...	Ribo-seq	GTG		14	sORFs_org_Human	ncRNA sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
534113	96	TTG ...	LRV ...	Ribo-seq	TTG		13	sORFs_org_Human	ncRNA sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
105278	171	TTG ...	LKI ...	Ribo-seq	TTG		18	sORFs_org_Human	ncRNA sORF	BJ, Blood, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, U2OS
534115	102	CTG ...	LDL ...	Ribo-seq	CTG		14	sORFs_org_Human	ncRNA sORF	BJ, Blood, guo_2014, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
105284	249	GTG ...	VGP ...	Ribo-seq	GTG		21	sORFs_org_Human	ncRNA sORF	BJ, Blood, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
105280	201	GTG ...	VVA ...	Ribo-seq	GTG		20	sORFs_org_Human	ncRNA sORF	BJ, Blood, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
916448	63	TTT ...	FLP ...	Ribo-seq	TTT		1	sORFs_org_Human	ncRNA sORF	Jurkat
409627	111	AAT ...	NDW ...	Ribo-seq	AAT		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
409633	189	GGT ...	GGK ...	Ribo-seq	GGT		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat

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