Transcript 104743

Transcript

ID CARD

MetamORF ID

104743

ENST00000265838

Name

ACAT1-201

Strand

Biotype

protein_coding

Start-end positions

108121516-108147776

CDS Start-stop positions

108121607-108147390

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

HGNC:93

Aliases

ACAT,
ACAT1, ENSG00000075239, HGNC:93,
NCBI:38, OFF:ACAT1, THIL

Chr 11

ORFs

15 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
292159	60	TTG ...	LIF ...	Ribo-seq	TTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, LCL, MDA-MB-231, RPE-1, U2OS
1207222	42	ATG ...	MQR ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
6519	36	ATG ...	MWN ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
3310363	1284	ATG ...	MAV ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
637651	57	CTG ...	LFL ...	Ribo-seq	CTG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, HFF, MDA-MB-231, MM1S, RPE-1, THP-1
103876	30	ATG ...	MME ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1131456	42	TTG ...	LIF ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
1207234	30	ATG ...	MEE ...	Ribo-seq	ATG	strong	1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
290313	45	ATG ...	MKN ...	Ribo-seq	ATG	moderate	1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
292163	66	ATG ...	MEE ...	Ribo-seq	ATG		11	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
915138	60	GAC ...	DSF ...	Ribo-seq	GAC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
6544	102	ATG ...	MNR ...	Ribo-seq	ATG	moderate	1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
292161	48	TTG ...	LLL ...	Ribo-seq	TTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, LCL, MDA-MB-231, RPE-1, U2OS
1138417	30	TTG ...	LLL ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
104742	60	CTG ...	LMS ...	Ribo-seq	CTG		11	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1

Export data