Transcript 10434 | MetamORF

Transcript

ID CARD

MetamORF ID

10434

ENST00000372759

Name

ZMPSTE24-201

Strand

Biotype

protein_coding

Start-end positions

40258107-40294184

CDS Start-stop positions

40258272-40292669

CDS Relative positions

Sequences

Transcript sequence

CTG ...

Genome browsers

UCSC

Gene

HGNC:12877

Aliases

ENSG00000084073,
FACE-1, HGNC:12877, HGPS,
NCBI:10269, OFF:ZMPSTE24, PRO1,
STE24, Ste24p, ZMPSTE24

Chr 1

ORFs

61 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
107540	36	CTG ...	LVC ...	Ribo-seq	CTG	moderate	15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, THP-1, U2OS
300064	54	TTG ...	LTN ...	Ribo-seq	TTG	weak	14	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
300173	48	CTG ...	LTG ...	Ribo-seq	CTG	weak	16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
107512	90	TTG ...	LEE ...	Ribo-seq	TTG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, guo_2014, HEK293, HeLa, LCL, MDA-MB-231, THP-1, U2OS
300054	78	ATG ...	MLI ...	Ribo-seq	ATG	weak	12	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
541017	39	CTG ...	LEV ...	Ribo-seq	CTG	strong	11	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
920222	36	CTT ...	LIF ...	Ribo-seq	CTT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
3228751	33	TTG ...	LDQ ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa
3400771	1428	ATG ...	MGM ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
299946	156	GTG ...	VAP ...	Ribo-seq	GTG	strong	14	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
920248	54	CTC ...	LCT ...	Ribo-seq	CTC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
184187	219	TTG ...	LRN ...	Ribo-seq	TTG		19	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, guo_2014, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
541015	60	ATG ...	MNW ...	Ribo-seq	ATG		16	sORFs_org_Human	InCDS Overlapping sORF	BJ, guo_2014, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1, U2OS
920269	63	GCC ...	AMN ...	Ribo-seq	GCC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
250879	60	ATG ...	MNW ...	Ribo-seq	ATG		18	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
541045	33	ATG ...	MIA ...	Ribo-seq	ATG	weak	1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
300058	66	TTG ...	LPL ...	Ribo-seq	TTG	moderate	10	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
920175	90	GTA ...	VFC ...	Ribo-seq	GTA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
920207	87	TCA ...	SQS ...	Ribo-seq	TCA	weak	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
889467	66	GAC ...	DQN ...	Ribo-seq	GAC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
184193	96	CTG ...	LDG ...	Ribo-seq	CTG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, Jurkat, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
300017	60	CTG ...	LDG ...	Ribo-seq	CTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, LCL, THP-1, U2OS
184185	228	CTG ...	LKH ...	Ribo-seq	CTG		20	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, guo_2014, HEK293, HEK293T, HeLa, hES, Jurkat, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
300036	39	GTG ...	VTI ...	Ribo-seq	GTG	moderate	13	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
300034	45	TTG ...	LGV ...	Ribo-seq	TTG	strong	13	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
107638	54	CTG ...	LFL ...	Ribo-seq	CTG	weak	17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
300038	36	CTG ...	LAV ...	Ribo-seq	CTG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MM1S, RPE-1, THP-1, U2OS
300030	45	GTG ...	VYF ...	Ribo-seq	GTG	weak	14	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
889502	45	AGT ...	SLF ...	Ribo-seq	AGT		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
299937	195	GTG ...	VTP ...	Ribo-seq	GTG	moderate	14	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
300079	48	CTG ...	LAW ...	Ribo-seq	CTG	strong	16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
642644	72	ATG ...	MGA ...	Ribo-seq	ATG	strong	8	sORFs_org_Human Johnstone2016	sORF Upstream	BJ, Brain_tumor, HEK293, HeLa, hES, HFF, RPE-1, THP-1
920242	63	AGA ...	RRV ...	Ribo-seq	AGA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
184191	126	TTG ...	LEE ...	Ribo-seq	TTG		18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, guo_2014, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
889454	105	GGA ...	GDF ...	Ribo-seq	GGA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
184197	78	ATG ...	MLA ...	Ribo-seq	ATG		18	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1830917	39	ATG ...	MRT ...	Ribo-seq	ATG	weak	2	sORFs_org_Human Johnstone2016	Alternative Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
300090	30	ATG ...	MRK ...	Ribo-seq	ATG	moderate	16	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HAP1, HEK293, HeLa, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
300032	78	CTG ...	LCL ...	Ribo-seq	CTG	weak	12	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
184195	84	GTG ...	VVM ...	Ribo-seq	GTG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
300051	90	TTG ...	LSQ ...	Ribo-seq	TTG	weak	10	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
107627	51	ATG ...	MHL ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
920109	30	TGC ...	CCW ...	Ribo-seq	TGC	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
184201	69	TTG ...	LDQ ...	Ribo-seq	TTG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
300024	39	CTG ...	LAL ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL, U2OS
10433	54	CTG ...	LET ...	Ribo-seq	CTG	moderate	24	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
300056	75	CTG ...	LII ...	Ribo-seq	CTG	moderate	10	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
10436	33	CTG ...	LWL ...	Ribo-seq	CTG	moderate	22	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
889472	42	AAA ...	KNM ...	Ribo-seq	AAA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
513360	36	ATG ...	MAS ...	Ribo-seq	ATG		13	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
920250	33	CCA ...	PGG ...	Ribo-seq	CCA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
184199	75	CTG ...	LAL ...	Ribo-seq	CTG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
300022	42	ATG ...	MLA ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL, U2OS
540902	195	GTG ...	VWH ...	Ribo-seq	GTG		13	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, HEK293, HEK293T, HeLa, hES, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
540900	201	GTG ...	VSV ...	Ribo-seq	GTG		12	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, HEK293, HEK293T, HeLa, hES, MM1S, RPE-1, THP-1, U2OS
642768	39	ATG ...	MLI ...	Ribo-seq	ATG	moderate	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231, RPE-1, THP-1
300020	48	GTG ...	VVM ...	Ribo-seq	GTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, LCL, U2OS
920115	33	TGC ...	CID ...	Ribo-seq	TGC	weak	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
540898	213	CTG ...	LKG ...	Ribo-seq	CTG		12	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, HEK293, HEK293T, HeLa, hES, MM1S, RPE-1, THP-1, U2OS
889498	54	TCA ...	SSS ...	Ribo-seq	TCA		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
541011	33	CTG ...	LRE ...	Ribo-seq	CTG	weak	12	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, hES, MDA-MB-231, RPE-1, THP-1, U2OS

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