Transcript 10349 | MetamORF

Transcript

ID CARD

MetamORF ID

10349

ENST00000539887

Name

STRAP-205

Strand

Biotype

retained_intron

Start-end positions

15900899-15903478

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ACT ...

Genome browsers

UCSC

Gene

HGNC:30796

Aliases

ENSG00000023734,
HGNC:30796, MAWD, NCBI:11171,
OFF:STRAP, pt-wd, STRAP,
UNRIP

Chr 12

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
919799	78	ATT ...	IQI ...	Ribo-seq	ATT	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
919794	39	GAT ...	DWF ...	Ribo-seq	GAT		1	sORFs_org_Human	Intronic sORF	Jurkat
919792	99	CCA ...	PKI ...	Ribo-seq	CCA		1	sORFs_org_Human	Intronic sORF	Jurkat
10348	57	GTG ...	VVS ...	Ribo-seq	GTG	strong	18	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1
410516	30	TCC ...	SRD ...	Ribo-seq	TCC		3	sORFs_org_Human	Intronic sORF	HCT116, HEK293, Jurkat
484381	84	TTG ...	LLF ...	Ribo-seq	TTG	weak	4	sORFs_org_Human	Intronic sORF	HEK293, HEK293T
106762	90	TTG ...	LLQ ...	Ribo-seq	TTG	moderate	4	sORFs_org_Human	Intronic sORF	HEK293, HEK293T, hES
1827218	36	ATG ...	MEK ...	Ribo-seq	ATG	strong	1	sORFs_org_Human	Intronic sORF	HeLa
10351	54	GTG ...	VSW ...	Ribo-seq	GTG	moderate	21	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HCT116, HEK293, HEK293T, HeLa, hES, Jurkat, LCL, MDA-MB-231, MM1S, RPE-1
919797	84	CAG ...	QRI ...	Ribo-seq	CAG	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
919803	51	CTG ...	LML ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
106760	33	TTG ...	LVF ...	Ribo-seq	TTG	strong	17	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
410514	36	TGG ...	WFS ...	Ribo-seq	TGG		2	sORFs_org_Human	Intronic sORF	HCT116, HEK293
919801	63	TTC ...	FLQ ...	Ribo-seq	TTC	weak	1	sORFs_org_Human	Intronic sORF	Jurkat

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