Transcript 10334 | MetamORF

Transcript

ID CARD

MetamORF ID

10334

ENST00000538718

Name

STRAP-204

Strand

Biotype

protein_coding

Start-end positions

15897945-15903340

CDS Start-stop positions

-15902978

CDS Relative positions

Sequences

Transcript sequence

GAA ...

Genome browsers

UCSC

Gene

HGNC:30796

Aliases

ENSG00000023734,
HGNC:30796, MAWD, NCBI:11171,
OFF:STRAP, pt-wd, STRAP,
UNRIP

Chr 12

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
410511	150	ATG ...	MAF ...	Ribo-seq	ATG		1	sORFs_org_Human	sORF	HCT116
10340	45	CTG ...	LME ...	Ribo-seq	CTG	moderate	26	sORFs_org_Human	sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
707022	81	TGG ...	WFR ...	Ribo-seq	TGG		1	sORFs_org_Human	sORF	Jurkat
10346	57	ATG ...	MAN ...	Ribo-seq	ATG		24	sORFs_org_Human	sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
707024	45	TGT ...	CGR ...	Ribo-seq	TGT		2	sORFs_org_Human	sORF	HEK293, Jurkat
410505	39	GAG ...	ENS ...	Ribo-seq	GAG	moderate	3	sORFs_org_Human	sORF	HCT116, HEK293, Jurkat
919787	84	TGG ...	WFR ...	Ribo-seq	TGG		1	sORFs_org_Human	sORF	Jurkat
412881	84	CAG ...	QWF ...	Ribo-seq	CAG		2	sORFs_org_Human	sORF	HCT116, HEK293
10344	30	ATG ...	MPV ...	Ribo-seq	ATG	weak	23	sORFs_org_Human	sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
10336	60	TTG ...	LQA ...	Ribo-seq	TTG	weak	19	sORFs_org_Human	sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
410509	87	CAG ...	QWF ...	Ribo-seq	CAG		2	sORFs_org_Human	sORF	HCT116, HEK293
10342	42	ATG ...	MEN ...	Ribo-seq	ATG	moderate	27	sORFs_org_Human	sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
10333	63	TTG ...	LLQ ...	Ribo-seq	TTG	weak	19	sORFs_org_Human	sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
10338	51	GTG ...	VKI ...	Ribo-seq	GTG	moderate	17	sORFs_org_Human	sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
14186	54	ATG ...	MAN ...	Ribo-seq	ATG		24	sORFs_org_Human	sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
919789	48	TGT ...	CGR ...	Ribo-seq	TGT		2	sORFs_org_Human	sORF	HEK293, Jurkat

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