Transcript 10326 | MetamORF

Transcript

ID CARD

MetamORF ID

10326

ENST00000419869

Name

STRAP-202

Strand

Biotype

protein_coding

Start-end positions

15882395-15903478

CDS Start-stop positions

15882708-15902978

CDS Relative positions

Sequences

Transcript sequence

CTT ...

Genome browsers

UCSC

Gene

HGNC:30796

Aliases

ENSG00000023734,
HGNC:30796, MAWD, NCBI:11171,
OFF:STRAP, pt-wd, STRAP,
UNRIP

Chr 12

ORFs

58 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
484376	66	CTG ...	LAT ...	Ribo-seq	CTG	strong	16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1
919763	57	CAT ...	HGN ...	Ribo-seq	CAT	moderate	6	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, HEK293, HeLa, Jurkat, THP-1
536825	48	TTG ...	LLA ...	Ribo-seq	TTG	weak	14	sORFs_org_Human	sORF Upstream	BJ, HEK293, HEK293T, HeLa, MM1S, RPE-1, THP-1, U2OS
1310296	36	GGG ...	GDR ...	Ribo-seq	GGG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
919765	45	ACA ...	TDA ...	Ribo-seq	ACA	strong	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, Jurkat
707026	84	GAT ...	DWF ...	Ribo-seq	GAT		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
410486	120	GGT ...	GVD ...	Ribo-seq	GGT	strong	2	sORFs_org_Human	Alternative sORF Upstream	HCT116, Jurkat
410490	126	ATC ...	IVA ...	Ribo-seq	ATC	moderate	1	sORFs_org_Human	sORF Upstream	HCT116
919771	42	CAC ...	HAL ...	Ribo-seq	CAC		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, Jurkat, THP-1
536831	78	CTG ...	LTP ...	Ribo-seq	CTG	weak	12	sORFs_org_Human	Alternative sORF Upstream	BJ, HAP1, HEK293, HEK293T, HeLa, MM1S, RPE-1, THP-1, U2OS
297760	30	CTG ...	LLW ...	Ribo-seq	CTG	weak	13	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
919773	33	AAG ...	KCG ...	Ribo-seq	AAG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
297748	117	GTG ...	VDA ...	Ribo-seq	GTG	strong	11	sORFs_org_Human	Alternative sORF Upstream	HEK293, HEK293T, HeLa, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
919769	51	CAG ...	QWH ...	Ribo-seq	CAG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
410498	57	ACG ...	TTT ...	Ribo-seq	ACG	moderate	4	sORFs_org_Human	Alternative Overlapping sORF Upstream	HCT116, HEK293, Jurkat
707019	63	CCC ...	PWL ...	Ribo-seq	CCC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
3187735	81	TGG ...	WFS ...	Ribo-seq	TGG		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
10328	48	TTG ...	LEH ...	Ribo-seq	TTG	strong	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231
919752	57	CCC ...	PSL ...	Ribo-seq	CCC	weak	1	sORFs_org_Human	Alternative sORF Upstream	Jurkat
707017	45	CAC ...	HAL ...	Ribo-seq	CAC		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, Jurkat, THP-1
410488	189	GGA ...	GRC ...	Ribo-seq	GGA	weak	2	sORFs_org_Human	Alternative sORF Upstream	HCT116, Jurkat
536822	171	CTG ...	LAR ...	Ribo-seq	CTG	moderate	9	sORFs_org_Human	Alternative sORF Upstream	HAP1, HEK293, HEK293T, HeLa, MM1S, RPE-1, U2OS
14184	36	CTG ...	LWI ...	Ribo-seq	CTG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
10342	42	ATG ...	MEN ...	Ribo-seq	ATG	moderate	1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
451661	51	CTG ...	LQI ...	Ribo-seq	CTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HEK293T, hES
1301874	153	GCG ...	AGA ...	Ribo-seq	GCG	strong	1	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ
536835	36	TTG ...	LPF ...	Ribo-seq	TTG	moderate	12	sORFs_org_Human	Alternative sORF Upstream	BJ, HAP1, HEK293, HEK293T, HeLa, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
10325	90	ATG ...	MVN ...	Ribo-seq	ATG	strong	2	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1209902	51	GTG ...	VRI ...	Ribo-seq	GTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, HEK293, HeLa
297752	123	GTG ...	VAG ...	Ribo-seq	GTG	strong	17	sORFs_org_Human	sORF Upstream	BJ, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
707015	54	CAG ...	QWH ...	Ribo-seq	CAG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
919759	126	TGC ...	CSR ...	Ribo-seq	TGC	weak	4	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, HEK293, Jurkat
297763	30	CTG ...	LLM ...	Ribo-seq	CTG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
14182	45	TTG ...	LSR ...	Ribo-seq	TTG		21	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
484373	99	CTG ...	LEQ ...	Ribo-seq	CTG	strong	26	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1095447	48	CTG ...	LLV ...	Ribo-seq	CTG	weak	8	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, RPE-1
919755	105	GAC ...	DCC ...	Ribo-seq	GAC	moderate	1	sORFs_org_Human	Alternative sORF Upstream	Jurkat
410496	75	CAG ...	QKR ...	Ribo-seq	CAG	weak	2	sORFs_org_Human	Alternative Overlapping sORF Upstream	HCT116, Jurkat
536829	93	CTG ...	LVA ...	Ribo-seq	CTG	moderate	13	sORFs_org_Human	Alternative sORF Upstream	BJ, HAP1, HEK293, HEK293T, HeLa, MM1S, RPE-1, THP-1, U2OS
639944	30	GTG ...	VAS ...	Ribo-seq	GTG	moderate	13	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
707028	75	TCC ...	SRD ...	Ribo-seq	TCC		2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, Jurkat
3201570	36	TAC ...	YFW ...	Ribo-seq	TAC	weak	1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
1827218	36	ATG ...	MEK ...	Ribo-seq	ATG	strong	1	Johnstone2016	Alternative Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
297750	108	GTG ...	VNR ...	Ribo-seq	GTG	moderate	11	sORFs_org_Human	Alternative sORF Upstream	HEK293, HEK293T, HeLa, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
919778	66	AAG ...	KLC ...	Ribo-seq	AAG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
536827	96	TTG ...	LLV ...	Ribo-seq	TTG	weak	15	sORFs_org_Human	Alternative sORF Upstream	BJ, HAP1, HEK293, HEK293T, HeLa, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
536833	207	GTG ...	VPP ...	Ribo-seq	GTG	weak	18	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
919767	39	TGG ...	WPS ...	Ribo-seq	TGG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
410492	114	CCG ...	PVL ...	Ribo-seq	CCG	strong	1	sORFs_org_Human	sORF Upstream	HCT116
410494	39	CCC ...	PSS ...	Ribo-seq	CCC	weak	2	sORFs_org_Human	Alternative sORF Upstream	HCT116, Jurkat
919750	174	TGG ...	WLA ...	Ribo-seq	TGG	weak	2	sORFs_org_Human	Alternative sORF Upstream	HEK293, Jurkat
919776	30	TGG ...	WYK ...	Ribo-seq	TGG	weak	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
484378	45	TTG ...	LIW ...	Ribo-seq	TTG	weak	14	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1
919757	81	TCC ...	SLT ...	Ribo-seq	TCC	moderate	1	sORFs_org_Human	Alternative sORF Upstream	Jurkat
451659	75	ATG ...	MPP ...	Ribo-seq	ATG		11	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1
10330	33	ATG ...	MDD ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
106735	81	CTG ...	LQQ ...	Ribo-seq	CTG	moderate	28	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
297754	51	CTG ...	LLL ...	Ribo-seq	CTG	weak	16	sORFs_org_Human	sORF Upstream	BJ, Flp-In_T-REx-293, HEK293, HEK293T, HeLa, LCL, MM1S, RPE-1, THP-1, U2OS

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