Transcript 102245

Transcript

ID CARD

MetamORF ID

102245

ENST00000521571

Name

FADS2-208

Strand

Biotype

protein_coding

Start-end positions

61840297-61863077

CDS Start-stop positions

61848243-

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

HGNC:3575

Aliases

D6D,
DES6, ENSG00000134824, FADS2,
FADSD6, HGNC:3575, LLCDL2,
NCBI:9415, OFF:FADS2, SLL0262,
TU13

Chr 11

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
102249	123	CTG ...	LES ...	Ribo-seq	CTG	strong	6	sORFs_org_Human	sORF	guo_2014, HEK293, HeLa
102247	177	CTG ...	LFK ...	Ribo-seq	CTG	moderate	8	sORFs_org_Human	sORF	Brain, guo_2014, HEK293, HeLa, HFF
1821332	48	GTG ...	VLL ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	sORF	HeLa
528801	93	CTG ...	LDG ...	Ribo-seq	CTG	strong	7	sORFs_org_Human	sORF	HAP1, HeLa, hES, MDA-MB-231, RPE-1, THP-1, U2OS
528794	84	TTG ...	LHG ...	Ribo-seq	TTG	moderate	9	sORFs_org_Human	sORF	BJ, HEK293, HEK293T, hES, MDA-MB-231, RPE-1, THP-1, U2OS
528799	54	ATG ...	MAG ...	Ribo-seq	ATG	strong	6	sORFs_org_Human	sORF	HEK293T, MDA-MB-231, RPE-1, THP-1, U2OS
1506222	87	ATG ...	MVH ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	sORF	BJ, MDA-MB-231
528797	60	TTG ...	LAM ...	Ribo-seq	TTG	strong	7	sORFs_org_Human	sORF	HEK293, HEK293T, hES, MDA-MB-231, RPE-1, THP-1, U2OS
102251	186	CTG ...	LQH ...	Ribo-seq	CTG		4	sORFs_org_Human	sORF	Brain, guo_2014, HEK293
102244	204	CTG ...	LRK ...	Ribo-seq	CTG	moderate	9	sORFs_org_Human	sORF	Blood, Brain, guo_2014, HEK293, HeLa, HFF
1008258	141	CTG ...	LAH ...	Ribo-seq	CTG	moderate	5	sORFs_org_Human	sORF	guo_2014, HEK293, HeLa
1821334	42	TTG ...	LVN ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	sORF	HeLa
1008256	159	GTG ...	VFF ...	Ribo-seq	GTG	weak	6	sORFs_org_Human	sORF	guo_2014, HEK293, HeLa, HFF
286181	72	CTG ...	LSF ...	Ribo-seq	CTG	weak	9	sORFs_org_Human	sORF	HEK293, HEK293T, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS

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