Transcript 10166 | MetamORF

Transcript

ID CARD

MetamORF ID

10166

ENST00000539204

Name

YBX3-207

Strand

Biotype

processed_transcript

Start-end positions

10704023-10718430

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

HGNC:2428

Aliases

CSDA,
CSDA1, dbpA, ENSG00000060138,
HGNC:2428, NCBI:8531, OFF:YBX3,
YBX3, ZONAB

Chr 12

ORFs

29 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1521992	291	CTG ...	LQI ...	Ribo-seq	CTG		5	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, MDA-MB-231, RPE-1
10172	165	TTG ...	LTP ...	Ribo-seq	TTG		23	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
3201501	138	CCC ...	PHP ...	Ribo-seq	CCC		1	sORFs_org_Human	ncRNA sORF	HEK293
919376	213	TCG ...	SLT ...	Ribo-seq	TCG		1	sORFs_org_Human	ncRNA sORF	Jurkat
1299195	276	ATG ...	MVF ...	Ribo-seq	ATG		1	sORFs_org_Human	ncRNA sORF	HEK293T
10176	207	CTG ...	LGR ...	Ribo-seq	CTG		18	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, U2OS
1521990	267	GTG ...	VAT ...	Ribo-seq	GTG		4	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, MDA-MB-231
919370	57	AGC ...	STT ...	Ribo-seq	AGC	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
10170	156	CTG ...	LPL ...	Ribo-seq	CTG		22	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
106508	48	TTG ...	LTV ...	Ribo-seq	TTG		21	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, U2OS
919368	45	GGG ...	GTG ...	Ribo-seq	GGG	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
10168	150	CTG ...	LIG ...	Ribo-seq	CTG		23	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
919366	36	TCA ...	SSK ...	Ribo-seq	TCA	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
919378	162	TTT ...	FDR ...	Ribo-seq	TTT		2	sORFs_org_Human	ncRNA sORF	HEK293, Jurkat
919384	48	GTA ...	VPA ...	Ribo-seq	GTA	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
10178	231	CTG ...	LFL ...	Ribo-seq	CTG		12	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, RPE-1
919374	36	CAC ...	HGS ...	Ribo-seq	CAC		1	sORFs_org_Human	ncRNA sORF	Jurkat
919386	153	CCA ...	PLI ...	Ribo-seq	CCA		1	sORFs_org_Human	ncRNA sORF	Jurkat
3201504	246	ACT ...	TSS ...	Ribo-seq	ACT		1	sORFs_org_Human	ncRNA sORF	HEK293
1521988	258	ATG ...	MEG ...	Ribo-seq	ATG		4	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, MDA-MB-231
410376	159	GAC ...	DRR ...	Ribo-seq	GAC		1	sORFs_org_Human	ncRNA sORF	HCT116
919380	171	GGA ...	GQT ...	Ribo-seq	GGA		1	sORFs_org_Human	ncRNA sORF	Jurkat
1299193	273	GTG ...	VFF ...	Ribo-seq	GTG		2	sORFs_org_Human	ncRNA sORF	HEK293, HEK293T
10165	135	CTG ...	LGP ...	Ribo-seq	CTG		23	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
919372	69	AGT ...	SPR ...	Ribo-seq	AGT	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
106510	231	CTG ...	LRR ...	Ribo-seq	CTG		5	sORFs_org_Human	ncRNA sORF	guo_2014, HEK293
919382	42	GCA ...	AAA ...	Ribo-seq	GCA	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
10174	174	GTG ...	VKD ...	Ribo-seq	GTG		22	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
1603189	246	GTG ...	VAL ...	Ribo-seq	GTG		3	sORFs_org_Human	ncRNA sORF	Blood, HEK293, MDA-MB-231

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